Query= MSMg01no522_a21.b1 MSMg01no522_a21.b1 CHROMAT_FILE:
MSMg01no522_a21.b1 PHD_FILE: MSMg01no522_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:33 2005
(603 letters)
>mm_chr2_59346567_59347569
Length = 1003
Score = 1089 bits (563), Expect = 0.0
Identities = 590/599 (98%)
Strand = Plus / Plus
Query: 5 ggaattcccagtagtcacctctgattgatgataaattttttcattgctttctgcccctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcccagtagtcacctctgattgatgataaattttttcattgctttctgcccctgt 264
Query: 65 ctaccaccctattctagatacctagttttttgtgctgtctgtcccacagtcttcctgtcc 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccaccctattctagatgcctagttttttgtgctgtctgtcccacagtcttcctgtcc 324
Query: 125 ttcttcttctcatctccccgacttgagccaaatcagccatcagctatttcttgggtactt 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttcttctcatctccccgactcgagccaaatcagccatcagctatttcttgggtactt 384
Query: 185 cagagagtcgctttatcccaacatagcttgccagccccaacaagtttgccatcaactgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagagtcgctttatcccaacatagcttgccagccccaacaagtttgccatcaactgtc 444
Query: 245 aggacgttatgatggcatccaaatatgacagagtagctaagtgatgaataattaattaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggacgttatgatggcatccaaatatgacagagtagctaagtgatgaataattaattaga 504
Query: 305 aaacatgaaatgacagaatgtaagccaagggaaatgagaggttgagagaaaaagagcaga 364
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacgtgaaatgacagaacataagccaagggaaatgagaggttgagagaaaaagagcaga 564
Query: 365 aaatgttcaaagaaatagccaaggcctgagagaaaaataagcctctggaaggctaagtgg 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaattttcaaagaaatagccaaggcctgagagaaaaataagcctctggaaggctaagtgg 624
Query: 425 tctctgaggctaggtgggggagtttctctgggcatgccttagcctcaagtctgcagtggc 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctctgaggttaggtgggggagtttctctgggcatgccttagcctcaagtctgcagtggc 684
Query: 485 ctcttccatcccataagaacaaaggtgagggaggaagctgagaattctccaaatagacag 544
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcttccatcccataagaacaaaggcgagggaggaagctgagaattctccaaatagacag 744
Query: 545 gctctgctgtaattttgacaagaaacagaactgaatttgaagaaagaaatctttgagtg 603
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctccgctgtaattttgacaagaaacagaactgaatttgaagaaagaaatctttgagtg 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_a21.g1 MSMg01no522_a21.g1 CHROMAT_FILE:
MSMg01no522_a21.g1 PHD_FILE: MSMg01no522_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:34 2005
(586 letters)
>mm_chr2_59474840_59475825
Length = 986
Score = 1087 bits (562), Expect = 0.0
Identities = 582/590 (98%), Gaps = 4/590 (0%)
Strand = Plus / Minus
Query: 1 cagatcctggtgatggtggccttctaaaccacaggaaggacaatggtggataggagggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagatcctggtgatggtggccttctaaaccacaggaaggacaatggtggataggagggac 602
Query: 61 acctacacggagcaagcgtgggctgctcctcttcacctcagcagtacacagaagacgctc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acctacgcggagcaagcgtgggctgctcctcttcacctcagcagtacacagaagacgctc 542
Query: 121 gctcgcccctgtcagtccactgagcttcctcatgtatgctcccagagaaactcagttcaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 541 gctcgcccctgtcagtccactgagcttcctcatgtctgctcccagagaaactcagttcaa 482
Query: 181 atggctaactgtagtgcctacttaatagagttatgcacaggctgccgccaggctgctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atggctaactgtagtgcctacttaatagagttatgcacaggctgccgccaggctgctcag 422
Query: 241 tacccgtggtttctctcagcacttttcaccctgttgctaccctaagcctctccagcctgc 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tactcgtggtttctctcagcacttttcaccctgttgctaccctaagcctctccagcctgc 362
Query: 301 aagcttcgcctcccttctcccagcttctggttcctaaaaaaccctgccatttgggccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagcttcgcctcccttctcccagcttctggttcctaaaaaaccctgccatttgggccctg 302
Query: 361 cgctcgcacggttctttttgtgcttctggtcccctgctcttggttcttctctctcactta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgctcgcacggttctttttgtgcttctggtcccctgctcttggttcttctctctcactta 242
Query: 421 gtcctctagactctgtggtcttctgtcttcatctcttgtcgtctctgtgtctctctctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcctctagactctgtggtcttctgtcttcatctcttgtcgtctctgtgtctctctctct 182
Query: 481 gtctgtctctctctgcctctgtctgtctctctctctatctctgtctgtctcactgtctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 181 gtctgtctctctctgcctctgtctgtctctctctctatctctgtctgtctctctgtctct 122
Query: 541 ct--gtctctctctctctgtctctctctct--gcctctgtctctctaaat 586
|| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121 ctctgtctctctctctctgtctctctctctctgcctctgtctctctaaat 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
