NTTTTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTACAAAAATAGAATAGACTGGAGGTTACAAGACT
GTGGGATTGGAGGAGTATAGGGAAAGGGTGGGTGGCCTTGAACATTAGAT
ATGGTACTTATGAAATATAAATTTCATGTCTGTTTACATGGCAAGGTAGC
CATAGACAATAATACATATGCCTTGTTTGGTGTTTTGTCAACTTCATGTA
AGCTAGAGTTATCTGGAAAGAAGAATTTCAATTGAGAAAATACCTCCATC
AGAATGCCAGTAGGCAAGTTTGTAATTGCATCTTCTTTATTAATGGCTAA
TTTGGGGGCTGGCTCACTGGAAGCAGTGATACCCCTGGACAGGTGTTTCT
GGGTGGTGTAAGAAAACAGGCTAAGTACACATGAAGAACAAACCAGTAAA
CAGTGTTCCTTTGTATACTGTTCTTCAGTTACTGCCTCCAGGTTCCTACC
CTAACTTTACTCAATGAATAGAATGTGACCTGACATTTTTAAGATGAAAA
AAACATTTTGTTCTCCAAGTTGTTTTTGGTCACAATGTTTTACCACAGCT
ATATAAACCATAATGAAGACACTGTCCTATATAGTTCAAAATAACTAAAA
CAGGATTTTAAAGTGTCTTGCTTGCNTACNGAAAATGAAATATAGACATC
TACCCCACTGTGCTGGATAGTTTTATGTCAACTTGACACAAGCTAGAGTT
ATAT

CCTTTGTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTCTGTTTTCTCA
GTCAATAAATCCCTCATCTGTTGCCACAATACAAAAGCACTGTCAGGAAC
GTTCCTGGATAAATTTTCCTCGTGAAACTTCCTCATATCCTTTCCTACTC
GCTTCCAATCTTCTAGTGTCAAGCTTCCCTCCTCTGGAAACCAGGGATTG
ATTTTTTGCACGAAATCATAAAATTCTTGTAAAGATTTATCCGAGATTTT
TAGGCCTCTTCCAGACAGCATGTGTTTAAACACTGACAGGAACAATTTTT
TCCCTTTTGATTCTGATTGCCCCATGATAAATACTTACCCGTCTTTATAA
CGAACTCGCCAGTCCGCCTGCCTGCAGCGCAGTCCCACGGGATCCTATCT
TTGCCTGAGAAAATAAAGAATAGAAAGAAAAAAAGGAAAGAAAAGAAAAG
ACTAATCTGCCCAGTTGTCCCTGTTCGAAGGCGCCAACTGCCACAGACAA
TCTGGGTCCCTGGTCTGTGAAGAACGGGATTTCTTAGGCAGATGGACAAA
GATTCCGGATGAAAATGACAGACAGATTACAGGAGAAATGTGTTGAATCT
GAATGTAATGTTCTGGTTGAGCTTCAGACTTATATAACAACGAATTATCA
GAAGATACAAATCCCAAAAAGACAAGATACACTGAAATTCACCAGTTACA
G

Query= MSMg01no522_b09.b1 MSMg01no522_b09.b1 CHROMAT_FILE:
MSMg01no522_b09.b1 PHD_FILE: MSMg01no522_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:36 2005
         (607 letters)



>mm_chr2_139028052_139029058
          Length = 1007

 Score = 1158 bits (599), Expect = 0.0
 Identities = 602/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttacaaaaatagaatagactggaggttacaagactgtgggattggaggagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttacaaaaatagaatagactggaggttacaagactgtgggattggaggagta 264

                                                                       
Query: 65  tagggaaagggtgggtggccttgaacattagatatggtacttatgaaatataaatttcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagggaaagggtgggtggccttgaacattagatatggtacttatgaaatataaatttcat 324

                                                                       
Query: 125 gtctgtttacatggcaaggtagccatagacaataatacatatgccttgtttggtgttttg 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctgtttatatggcaaggtagccatagacaataatacatatgccttgtttggtgttttg 384

                                                                       
Query: 185 tcaacttcatgtaagctagagttatctggaaagaagaatttcaattgagaaaatacctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaacttcatgtaagctagagttatctggaaagaagaatttcaattgagaaaatacctcc 444

                                                                       
Query: 245 atcagaatgccagtaggcaagtttgtaattgcatcttctttattaatggctaatttgggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcagaatgccagtaggcaagtttgtaattgcatcttctttattaatggctaatttgggg 504

                                                                       
Query: 305 gctggctcactggaagcagtgatacccctggacaggtgtttctgggtggtgtaagaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctggctcactggaagcagtgatacccctggacaggtgtttctgggtggtgtaagaaaac 564

                                                                       
Query: 365 aggctaagtacacatgaagaacaaaccagtaaacagtgttcctttgtatactgttcttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggctaagtacacatgaagaacaaaccagtaaacagtgttcctttgtatactgttcttca 624

                                                                       
Query: 425 gttactgcctccaggttcctaccctaactttactcaatgaatagaatgtgacctgacatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttactgcctccaggttcctaccctaactttactcaatgaatagaatgtgacctgacatt 684

                                                                       
Query: 485 tttaagatgaaaaaaacattttgttctccaagttgtttttggtcacaatgttttaccaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaagatgaaaaaaacattttgttctccaagttgtttttggtcacaatgttttaccaca 744

                                                                       
Query: 545 gctatataaaccataatgaagacactgtcctatatagttcaaaataactaaaacaggatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctatataaaccataatgaagacactgtcctatatagttcaaaataactaaaacaggatt 804

              
Query: 605 tta 607
           |||
Sbjct: 805 tta 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)