NNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCACAACAGATGAGTCTTGAATGGCTGAGGAGCAGTTGAAAT
GTTCAAAGTCCTTTTTGATCAGGGAAGTGCAAATCAAAATGACCCAAGAT
TCCACCTAACACCAATCAGAATGGCTAACATAAAAAACTCAGGTGACATT
GGTTTTTGAAACCTCAAAACTTATCCCCAGGCATACACCTTTTCCAACAA
GGCCACACCTCCTATTCCTTCCTAAACAGTCTATGAACTGGGAAAAATAA
AACATTTAAACACCTGAGCTTATGTGAGCCATTCTCATTCAAACTCCCAC
AACTATATTTCTATGTTTTCAGAATGTCTCTGTTTCATATTCTTCACACT
ATAAGTGGCAGCATCCTTACTATACAGAAGATCTAGATTTTGACTGTAGC
AAGAGAATCACCATTGTGAACCAACAGTGTGAAGGAAGTCAATAGCACAG
TTTTTTGTTTGTGCCATTCGTATTTGGTCTACAATCTTCCATTTAATTAT
TTGCAGAGACTTCTTCAAAGATGCCTCTAGTGTACTTCTTTTGTACTCTG
TCATTGCATTTGAGTCATGGGATAATGTTATTGTCCTCACATATGGCAAG
ATAATTATATCTACAATTCCATTTTCTTTGTGAGCCTTTTCATTACACGG
GAAGAATTTCAGCATTTCTGCAAAAGCTGTTGTTACCTTGGAGG

NTTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTTCTTCTTTGAAT
GATTCTTCTTTTTACCCAGGTTCTCCTATATTTTTTAATAGAGTGATTCA
TGTCTTCTGAATGTTCTCTGTAATCTTCATGAGATGGATTTTAGGTCAGA
GTCTTGCATTTCAGCTCTGCTAGAGTATGCAGGGCTTGCTGTGGTGGAAA
AACTGGGTTATGATGGTGCAAAGTGGTGTTGGTGTCTGTTGCTTATGTTC
TTGTTCTTGCCTCTTGGCATCTGGTTATCTCACGTGTTAACTGACAGTAC
TGCATCTGACTGTATACTGTCCATCCTGTGAGCCTGTGAGCCTAGTCGTG
AAGGAGCTCCTGGGAGTCATGCTGTCTCTGGTTGTGGCAGGGCATCAGAT
CACTGGCTCTGCCCGGGACCAAATGGAGAGTCTTTTATATTATCATGCTA
GCCTTTTTTGGATATCCAAATTGTCTATTTTATTTTATTTATTTTATTTA
TTTTTTAATGTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCT
AGCCCAAAAGTCCCACATACCCTCTCTCCCACTTCCCTACCCACCCATTC
CCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGC
GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCN

Query= MSMg01no522_d16.b1 MSMg01no522_d16.b1 CHROMAT_FILE:
MSMg01no522_d16.b1 PHD_FILE: MSMg01no522_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:47 2005
         (660 letters)



>mm_chr2_56127538_56128597
          Length = 1060

 Score =  951 bits (492), Expect = 0.0
 Identities = 610/654 (93%), Gaps = 12/654 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   ggaattcacaacagatgagtcttgaatggctgaggagcagttgaaatgttcaaagtcctt 68
           ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| 
Sbjct: 217 ggaattcacaacagaggagtctcgaatgactgaggagcagttgaaatgttcaaagtcctc 276

                                                                       
Query: 69  tttgatcaggg-aagtgcaaatcaaaatgaccca-agattccacctaacaccaatcagaa 126
           ||||||||||| || ||||||||||| | ||||  ||||||||||| |||||||||||||
Sbjct: 277 tttgatcaggggaa-tgcaaatcaaacttaccctgagattccaccttacaccaatcagaa 335

                                                                       
Query: 127 tggctaacataaaaaactcaggtgacattggtttttgaaacctcaaaacttatccccagg 186
           ||||||| || |||| ||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct: 336 tggctaagatcaaaacctcaggtgacattggcttttgaaacctcaaaacgtattcccagg 395

                                                                       
Query: 187 catacaccttttccaacaaggccacacctcctattccttcctaaacagtctatgaactgg 246
           ||||||        ||||||||||||| ||||||||||||||||||||||||  ||| ||
Sbjct: 396 cataca--------aacaaggccacacttcctattccttcctaaacagtctaccaacagg 447

                                                                       
Query: 247 gaaaaataaaacatttaaacacctgagcttatgtgagccattctcattcaaactcccaca 306
           | ||||||||||| ||||| ||||||||||||| ||   |||||||||||||||||||||
Sbjct: 448 ggaaaataaaacaattaaatacctgagcttatg-gaattattctcattcaaactcccaca 506

                                                                       
Query: 307 actatatttctatgttttcagaatgtctctgtttcatattcttcacactataagtggcag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actatatttctatgttttcagaatgtctctgtttcatattcttcacactataagtggcag 566

                                                                       
Query: 367 catccttactatacagaagatctagattttgactgtagcaagagaatcaccattgtgaac 426
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 567 catccttactatacagaagatctagattctgactgtagcaagagaatcaccattgtgaac 626

                                                                       
Query: 427 caacagtgtgaaggaagtcaatagcacagttttttgtttgtgccattcgtatttggtcta 486
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 caacagtgtgaaggaagtcaatagcacagttttttgtttgtgtcattcgtatttggtcta 686

                                                                       
Query: 487 caatcttccatttaattatttgcagagacttcttcaaagatgcctctagtgtacttcttt 546
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 caatcatccatttaattatttgcggagacttcttcaaagatgcctctagtgtacttcttt 746

                                                                       
Query: 547 tgtactctgtcattgcatttgagtcatgggataatgttattgtcctcacatatggcaaga 606
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 tgtactctgacattgcatttgagtcatgggataatgttattgtcctcacatatggcaaaa 806

                                                                 
Query: 607 taattatatctacaattccattttctttgtgagccttttcattacacgggaaga 660
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 807 taattatatttacaattacattttctttgtgagccttttcattacacgggaaga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)