BAC Information

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BAC

Clone NameMSMg01-522G11
Chromosome2 (Build37)
Map Location 7,906,951 - 7,907,611
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522G11.T7 (MSMg01no522_g11.b1)MSMg01-522G11.TJ (MSMg01no522_g11.g1)
ACCAG592970AG592971
length753747
length of high quality
(start - end)
641 (51 - 691)661 (83 - 743)
definitionCHROMAT_FILE: MSMg01no522_g11.b1 PHD_FILE: MSMg01no522_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:00 2005CHROMAT_FILE: MSMg01no522_g11.g1 PHD_FILE: MSMg01no522_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGACCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAG
CTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGT
CTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTAAGTCTGGCCTTGA
ACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAG
CTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCTTT
TTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCT
GGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAG
GAGCAAAGAGGAAATATGGCGCACAAAATAAGTATACAGGCCTTTCCAAG
GGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGA
GATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGCGG
AGGTCTCTAGGAGAAGGAGACTATACTCATCACTAGGTGAGCTCAAGGAG
CCAGTTCTTAATAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGAA
GGCGCTCTCCGGAGCAGGTGAAGCCACTGGACAACTAACAAAGATCGTCC
AGAGACCTCAGGAGTCATTCTCAGATTTTGTGGCCAGAATGACAGAGGCA
GCA
NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATGAGCCATTAACAA
AGTACTTCGTAATTACTAGCAGTATGAACAAATCAGGGAACAAACTGACA
CTCCTTGTTTGTTTTAGAATGATTACGTTGACTTAGATCTGAGGAATTCA
GATGCTGTTGGGAGAATATGCCTTACAGAATAATTTCTAATTTCTTGCTT
TTCTTGTGGAAAGAAAAAGTGCTAAAGTTTTAATATACAGCACTTTGAAT
AGAAATCTTGACAGAAATACCACTGAGACTTAAAGCTACTGTATCTACTG
AATAATTTCACCCTTTTGCTACTTAAATTATTAAGTCCCTTTCATGGCCT
TACCTAATACTACATTTTGTTCTATAGAGAATATGATACAAGAAAACTTA
AAGTTAATTCATAATGACAGCTCTATTTAATATCTACAACGAGTAGATCA
TCTCAGTTACTCTGAATAACTTCAAGTCTATAAGATAAATTATCCTTCCT
TATCTTTACAGATTAGGTGGCAAAATAAGTTTTCTTTGTCATCACTTGAA
CACAGTTGATCTATGGCCTAAACAACTTGTCCACCTTATTTCTATAAATA
AGGTTATATTTGAACATATCTGTGCCCAGTTCTTTACACACTGCACATGG
GCCCTTTCCATTATGGCAGAAGTGAATGTCTATATCTGATTCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_g11.g1 MSMg01no522_g11.g1 CHROMAT_FILE:
MSMg01no522_g11.g1 PHD_FILE: MSMg01no522_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:00 2005
         (661 letters)



>mm_chr2_7906751_7907811
          Length = 1061

 Score = 1232 bits (637), Expect = 0.0
 Identities = 655/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgagccattaacaaagtacttcgtaattactagcagtatgaacaaatcagggaaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgagccattaacaaaatacttcgtaattactagcagtatgaacaaatcagggaaca 260

                                                                       
Query: 61  aactgacactccttgtttgttttagaatgattacgttgacttagatctgaggaattcaga 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aactgacattccttgtttgttttagaatgattacgttgacttagatctgagaaattcaga 320

                                                                       
Query: 121 tgctgttgggagaatatgccttacagaataatttctaatttcttgcttttcttgtggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttgggagaatatgccttacagaataatttctaatttcttgcttttcttgtggaaa 380

                                                                       
Query: 181 gaaaaagtgctaaagttttaatatacagcactttgaatagaaatcttgacagaaatacca 240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aaaaaagtgctaaagttttaatatacagcactttgagtagaaatcttgacagaaatacca 440

                                                                       
Query: 241 ctgagacttaaagctactgtatctactgaataatttcacccttttgctacttaaattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagacttaaagctactgtatctactgaataatttcacccttttgctacttaaattatt 500

                                                                       
Query: 301 aagtccctttcatggccttacctaatactacattttgttctatagagaatatgatacaag 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcccctttcatggccttacctaatactacattttgttctatagagaatatgatacaag 560

                                                                       
Query: 361 aaaacttaaagttaattcataatgacagctctatttaatatctacaacgagtagatcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaacttaaagttaattcataatgacagctctatttaatatctacaacgagtagatcatc 620

                                                                       
Query: 421 tcagttactctgaataacttcaagtctataagataaattatccttccttatctttacaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagttactctgaataacttcaagtctataagataaattatccttccttatctttacaga 680

                                                                       
Query: 481 ttaggtggcaaaataagttttctttgtcatcacttgaacacagttgatctatggcctaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaggtggcaaaataagttttctttgtcatcacttgaacacagttgatctatggcctaaa 740

                                                                       
Query: 541 caacttgtccaccttatttctataaataaggttatatttgaacatatctgtgcccagttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacttgtccaccttatttctataaataaggttatatttgaacatatctgtgcccagttc 800

                                                                       
Query: 601 tttacacactgcacatgggccctttccattatggcagaagtgaatgtctatatctgattc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttacacactgcacatgggccctttccattatggcagaagtgaatgtctatatctgattc 860

            
Query: 661 t 661
           |
Sbjct: 861 t 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)