Query= MSMg01no522_l18.b1 MSMg01no522_l18.b1 CHROMAT_FILE:
MSMg01no522_l18.b1 PHD_FILE: MSMg01no522_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:25 2005
(623 letters)
>mm_chr2_99458076_99459098
Length = 1023
Score = 1085 bits (561), Expect = 0.0
Identities = 600/619 (96%), Gaps = 10/619 (1%)
Strand = Plus / Plus
Query: 5 gaattcacatatcaatcatgtactaaaaacattctaaatttcataatgcagagtacctaa 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatatcaatcatatactaaaaacattctaaatttcataatgcagagtacctaa 264
Query: 65 atttttaaggcatataatattaaccttttgttatattgtcaaaactaaaagtcagaattt 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattttaaggcatataatattaaccttttgttatattgtcaaaactaaaagtcagaattt 324
Query: 125 aagataccagtacagtgtctaatctgtagtattctggtagtaataatatatttatcttcc 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagataccagtatagtgtctaatctgtagtattctggtagtaataatatatttatcttcc 384
Query: 185 atctgtgtatatttatgtaatatgtatttatacatatgtatttatgcatatatttataca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctgtgtatatttatgtaatatgtatttatacatatgtatttatgcatatatttataca 444
Query: 245 tatgcaagcatatatgtgatcaagtagcatatttatgtatattcattcatgtgtgtttat 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgcaagcatatatgtgatcaagcagcatatttatgtatattcattcatgtgtgtttat 504
Query: 305 attaaatattttcagaaagatattaaaagtctaaacttatactaattgagcatcaaattc 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 attaaatattttcagaaagatattaaaagcctaaacttatactaattgagcatcaaattc 564
Query: 365 tgttagaactatttgaatgatgtatgtatgtatatataggctctactttatttttattat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttagaactatttgaatgatgtatgtatgtatatataggctctactttatttttattat 624
Query: 425 tacctatgatactgtataaaggctattcatataatattatataatattatggctatcagt 484
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tacctatgatactgtataaaggctattcatataatattat----------ggctatcagt 674
Query: 485 cattctatatttagtattttgaagtaatttaaaatatgagatggtatataggagttatag 544
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 675 cattctatatttagtattttgaagtgatttaaaatatgagatggtatataggagttatag 734
Query: 545 acagatacgttgccattttatacagaaaggatgagcaggttctattatatctgagggtct 604
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 735 acagatacattgccattttatacagaaaggatgagccggttctattatatctgagggtct 794
Query: 605 tgaaatcaatcatttatga 623
||||||||||| |||||||
Sbjct: 795 tgaaatcaatcttttatga 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_l18.g1 MSMg01no522_l18.g1 CHROMAT_FILE:
MSMg01no522_l18.g1 PHD_FILE: MSMg01no522_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:25 2005
(665 letters)
>mm_chr2_99605079_99606141
Length = 1063
Score = 1083 bits (560), Expect = 0.0
Identities = 573/578 (99%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 72 tcatgcactgaacaactaaatagtccactgagagacagctagtatgtagcagggacctct 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 tcatgcactgaacaactaaatagtccactgagagacagctagtatgtagcagggacctct 1004
Query: 132 tgaagaagagccaatatctttcatagttcagtcatctccatagctcaccaacaatatttt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tgaagaagagccaatatctttcatagttcagtcatctccatagctcaccaacaatatttt 944
Query: 192 caaaataaatattttttctgtccatacttgtctgggttgttaactgtgctcctacaaaat 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 caaaataaatattttttctgtccatacttgtctgggttgttaactgtgctcctacaaaat 884
Query: 252 tgaaatacatctaacttatacaattctaaatatatatacagaaatcatatgtacatttaa 311
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 883 tgaaatacatctaacttatacaattctaaatatatatacataaatcatatgtacatttaa 824
Query: 312 ttttattaaaatttttactagatataaaatcacagtttaactccaacagactgatagtat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttttattaaaatttttactagatataaaatcacagtttaactccaacagactgatagtat 764
Query: 372 gtaacagtaagcttcaactcaccaataacttcatctgggattattttaaacacagtagca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 763 gtaacagtaagcttcaactcaccaataacttcatctgggattattttaaacacagtaaca 704
Query: 432 ctagagataaaagacaccataaatatatagatgtgttgggaaaagaaacagttcatgtct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 703 ctagagataaaagacaccataaatatatagatgtgttgggaaaagaaacagttcatg--t 646
Query: 492 tcttggccatcacctagtaggatagtgatagatcagtactgaactattgttctgctcagt 551
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 645 tcttggccatcacctagtaggatagtgatagatcagtactgaactattgtgctgctcagt 586
Query: 552 actgaactaaatttaaaacttaaaaattgtgtggagctgttaatatactatttgaaccac 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actgaactaaatttaaaacttaaaaattgtgtggagctgttaatatactatttgaaccac 526
Query: 612 acacacacacacacacacacacacacacacacacacac 649
||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acacacacacacacacacacacacacacacacacacac 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space: 689715
Effective search space used: 689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
