Query= MSMg01no522_n17.b1 MSMg01no522_n17.b1 CHROMAT_FILE:
MSMg01no522_n17.b1 PHD_FILE: MSMg01no522_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:35 2005
(618 letters)
>mm_chr2_158408365_158409382
Length = 1018
Score = 1089 bits (563), Expect = 0.0
Identities = 602/615 (97%)
Strand = Plus / Plus
Query: 4 ggaattctctgcggcttgacaatggaaccttgggtcagtctctaaacagcaactcctttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcggcttgacaatggaaccttgggtcagtctctaaacagcaactcctttg 263
Query: 64 cctaatggagcctcatcatgcattggatgattgcagcttggggaaaccccagagctttgt 123
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 cctaatggagcctcatcatgcattggatgattgcagctcagggaaaccccagagctttgt 323
Query: 124 aagccaagaaatagaaacctctactctgtcataaaaggcagggttgagttgttgagttta 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 aagccaagaaatagaaacctctactctgtcataacaggcagggttgagttgttgagttta 383
Query: 184 aggagagaactctatatcagtgttcaaaaagggatggagagatggctccgttgtaaaagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggagagaactctatatcagtgttcaaaaagggatggagagatggctccgttgtaaaagt 443
Query: 244 acttgctgggcagacaggaggaccagagtttggatctcagcagccacttgacaagctcga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttgctgggcagacaggaggaccagagtttggatctcagcagccacttgacaagctcga 503
Query: 304 gtttggtccatgtatacctgtaactccagcctgggagatacagagccaggtagattgttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 gtttggtccatgtatacctgtaactccagcctgggagatacagagccaggtagattgctg 563
Query: 364 tggatagctggctgacagtttagttgaaaatgagtgatggtttgaatgtaattggccccc 423
||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct: 564 tggctagctggctgacagtttagttgaaaatgtgtggtggtttgaatgtaattggccctc 623
Query: 424 attgtcccatagggagtggcactattgggaggcatggtcttgttggagtaagtgtggcct 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 attgtcccatagggagtggcactattgggaggcatggtcttgttggagtaggtgtggcct 683
Query: 484 tgttggaagagatgtgtccctggggaggtgagctttgagatctgatatatgctcaagtct 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 tgttggaagagatgtgtccctggggaggtgagctttgagatatgatatatgctcaagtct 743
Query: 544 ggtcagagtaacatagtcccctcctgctgcctgaggatcatgggacttcttctctagcac 603
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 744 ggtcagagtaacatagtcccctcctgctgcctgaggatcgtggggcttcttctccagcac 803
Query: 604 tctgacgtcctgcat 618
|||||||||||||||
Sbjct: 804 tctgacgtcctgcat 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_n17.g1 MSMg01no522_n17.g1 CHROMAT_FILE:
MSMg01no522_n17.g1 PHD_FILE: MSMg01no522_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:35 2005
(669 letters)
>mm_chr2_158603544_158604611
Length = 1068
Score = 994 bits (514), Expect = 0.0
Identities = 559/574 (97%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 52 ttctcagtctcgatgcctatccttctactgcagcagagccctccaagggaagaattctca 111
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttctcagtcttgatgcctatccttctactgcagcagagccctccaagggaagaattctca 515
Query: 112 gtcttgatgcctatccttctactgcagcagagctctccaagggaaggcttcgtctccaag 171
|||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 514 gtctcgatgcc-ctccttctactgcagcagagccctccaaaggaaggcttcgtctccaag 456
Query: 172 gtggagaccccaagacagtaactgacaggcttgtaccccgtaaacatctgtagaattaaa 231
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtggagacctcaagacagtaaccgacaggcttgtaccccgtaaacatctgtagaattaaa 396
Query: 232 aagaaatcctaaagccagctaaggattggtggcatcttcagaagcttataggccctgatg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagaaatcctaaagccagctaaggattggtggcatcttcagaagcttataggccctgatg 336
Query: 292 gctttcacacagcctgtgtctaccccgttcatttggggcctgttaacagagtttaaaggc 351
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 335 gctttcacacagcctgtgtctaccccgttcacttggggcctgttaacagagtttaaaggc 276
Query: 352 aaaagccaggacaggagctcagcgtggcacttgctagctgtgtgacctggtgttgacctc 411
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 aaaagccaggacaggagctcagcgtggcacttgctagctgtgtgacctgatgttgacctc 216
Query: 412 tctcagccttgggttccttcctttctagaaggccaggatagcagcaccgctgagatggtt 471
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 215 tctcagccttgggttccttcctttctagaaggccaggatagcagcactgcttagatggtt 156
Query: 472 gagggagagcaagtctggagtgagcttggctcagttaggcagctggtgcctctgagtcca 531
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 155 gagggagagcaagtctggagtgagcttggctcagttaggaagctggtgcctctgagtcca 96
Query: 532 aggcaggctggcctgtactgggcagagatggctgcccagggctgacagcacctggatgag 591
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 95 aggcaggctggcctgcactgggcagagacggctgcccagggctgacagcacctggatgag 36
Query: 592 gaaagcagaacgaggcatacatgttctatatgtg 625
||||||||||||||||||||||||||||||||||
Sbjct: 35 gaaagcagaacgaggcatacatgttctatatgtg 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
