Query= MSMg01no523_e18.b1 MSMg01no523_e18.b1 CHROMAT_FILE:
MSMg01no523_e18.b1 PHD_FILE: MSMg01no523_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:10 2005
(534 letters)
>mm_chr2_28937094_28938027
Length = 934
Score = 938 bits (485), Expect = 0.0
Identities = 518/529 (97%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 8 ggaattctcgcctgca-cactgaaggaagtcagggcaggaattggaggcaggaacaaatg 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctcgcctgcaacactgaaggaagtcagggcaggaattggaggcaggaacaaatg 266
Query: 67 cagaggctgggaacactgcttgcttaacctgcctccttatagcactcaggttctcccaca 126
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagaggccaggaacactgcttgcttaacctgcctccttatagcactcaggttctcccaca 326
Query: 127 ttcagaaacctgccccacatagtccagtttggtgggggcatttctccgttgaggttccct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcagaaacctgccccacatagtccagtttggtgggggcatttctccgttgaggttccct 386
Query: 187 ctttgaaaatgtttctggtttgtgtcagacataaaagtagccagcacagtttgacttttt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctttgaaaatgtttctggtttgtgtcagacataaaagtagccagcacagtttgacttttt 446
Query: 247 tt-gttgtttttgttttttaaatagaaaataggttacattgtgcagaataagagaggcat 305
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttgttgtttttgttttttaaatagaaaataggttacattgtgcagaataagagaggcat 506
Query: 306 gaaaaagaacagtgtgagtagccctctgaccacaggaaaccagccagagagttttctggt 365
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaaaggaacagtgtgagtagccctctgaccacaggaaaccagccagagagttttctggt 566
Query: 366 cccttcccagagcatttgtgcaagaggctacagaccctggaacatgtccaaccatcagaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cccttcccagagcatttgtgcaagaggctacagaccctggaacatgtccaaccatcagaa 626
Query: 426 ctcacagtgccctggaaccatgtctgaccatccgagctcactctggccctgcacttttct 485
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctcacggtgccctggaaccacatctgaccatccgagctcactctggccctgcacttttct 686
Query: 486 cctccacctgaaagggtctccagggactgcctttcagagggcagctttg 534
|||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 687 cctccacctgca-gggtctccagggactgcctttcagagggcagctttg 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_e18.g1 MSMg01no523_e18.g1 CHROMAT_FILE:
MSMg01no523_e18.g1 PHD_FILE: MSMg01no523_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:10 2005
(543 letters)
>mm_chr2_29109811_29110753
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%)
Strand = Plus / Minus
Query: 1 agtcagttcaggatggaaaagcaggggctgcactcccagataaatccccttttcacactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 agtcagttcaggatggaaaagcaggggctgcactcccagataaatccccttttcacactg 843
Query: 61 acggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacagggctagttagg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 842 acggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacacggctagttagg 783
Query: 121 tgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagcatctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagcatctttg 723
Query: 181 catgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtcccgggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 catgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtcccgggtc 663
Query: 241 atctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatccagacactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatccagacactg 603
Query: 301 tatgatgtaacagcagggcactgctggggattgatggccctgcctgggggagacagcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tatgatgtaacagcagggcactgctggggattgatggccctgcctgggggagacagcagg 543
Query: 361 ccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcccttcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcccttcact 483
Query: 421 ggtgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttcctccaag 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gttgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttcctccaag 423
Query: 481 gagttccctctgggtggagacactgaggccaggataggaatatgtgtgtattatgggaga 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 422 gagttccctctggttggagacactgaggccaggataggaatatgtgtgtattaggggaga 363
Query: 541 gga 543
|||
Sbjct: 362 gga 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
