Query= MSMg01no524_d20.b1 MSMg01no524_d20.b1 CHROMAT_FILE:
MSMg01no524_d20.b1 PHD_FILE: MSMg01no524_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(672 letters)
>mm_chr2_81099996_81101065
Length = 1070
Score = 1131 bits (585), Expect = 0.0
Identities = 647/673 (96%), Gaps = 12/673 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagcagagaag-aataaatcatttttaggactattgaataatctttgtatctat 62
|||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1053 ggaattgagcagagaagaaataaatcatttttagaactattgaataatctttgtatctat 994
Query: 63 aattaatgcccaatgaagtcctaaataaggaagaactccacaaccacagacagtatagtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aattaatgcccaatgaagtcctaaataaggaagaactccacaaccacagacagtatagtg 934
Query: 123 aaacgatgtaaattcaaaccctaaccttagaatccaccagagacaaatctaatgactgtc 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 933 aaacgatgtaaattcaaaccctaaccttagaacccaccagagacaaatctaatgactgtc 874
Query: 183 aatgaggagaactggggatttctaaagcacaaccgac---------tgagaaaaatgtaa 233
||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 873 aatgaggagaactggggatttctaaagcacaactgactgagaaaaatgagaaaaatgtaa 814
Query: 234 aacctaaaactatgttgcaagaacaaagataaagttaaacttcataggggaaagaacaat 293
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 813 aacctaaaactatgttgcaagaacaaagataaagttaaacttcatgggggaaagaacaat 754
Query: 294 taaaaaaatcataaccataacgaatagaaagttctaaaactacatgtgaggacaatgtca 353
| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 753 t-aaaaaatcataaccacaacgaatagaaagttctaaaactatatgtgaggacaatgtca 695
Query: 354 gatagaacactcagacaacagaatggcaaacagacaaaggctgagtgtctgtctgagtta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gatagaacactcagacaacagaatggcaaacagacaaaggctgagtgtctgtctgagtta 635
Query: 414 aagtttgctgtgaaaacaatcaataaaaagtaatgtttgagatcaaaacacacagccaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aagtttgctgtgaaaacaatcaataaaaagtaatgtttgagatcaaaacacacagccaat 575
Query: 474 gcagaagtccttagactgtgttccagggactgtttcctatccctgtgagtctcaggtggt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gcagaagtccttagactgtgttccagggactgtttcctatccctgtgagtctcaggtggt 515
Query: 534 ctgtgagagcaaaacaagttgataatagtatattatttgtcttcttattcccatactttc 593
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctgtgagaacaaa-caagttgataatagtatattatttgtcttcttattcccatactttc 456
Query: 594 actgtgtggctcagaaaaccagcattttcttatttatctctctctctctctctctctctc 653
||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||| |||
Sbjct: 455 actgtgtggctcagaaaaccagcattttcttatttatttttctttctttctctctcactc 396
Query: 654 tctctctctctct 666
||| |||||||||
Sbjct: 395 tctgtctctctct 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_d20.g1 MSMg01no524_d20.g1 CHROMAT_FILE:
MSMg01no524_d20.g1 PHD_FILE: MSMg01no524_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(667 letters)
>mm_chr2_80968507_80969573
Length = 1067
Score = 1000 bits (517), Expect = 0.0
Identities = 595/667 (89%), Gaps = 70/667 (10%)
Strand = Plus / Plus
Query: 1 tgtcatgccacgtggcaaagcttgagacaatagtcctctgcctattccaggcctacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcatgccacgtggcaaagcttgagacaatagtcctctgcctattccaggcctacattt 260
Query: 61 ataacctttagctattgcaggttaaagttctcagggtaacagtccttgaaatggcacaga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacctttagctattgcaggtaaaagttctcagggtaacagtccttgaaatggcacaga 320
Query: 121 ttttagacacctaaaaacattgctaagtagaaacactaggctctaatgtgcatgaataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagacacctaaaaacattgctaagtagaaacactaggctctaatgtgcatgaataaa 380
Query: 181 ataattctgcttatagaaagcttaagaataaatgacatggtcgtgatgatgacagaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattctgcttatagaaagcttaagaataaatgacatggtcgtgatgatgacagaaatc 440
Query: 241 agaacaataattgcctttggaatgtagagattgagtggatgggacaagaaaacctgttat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 agaacaataattgcctttggaatgtagagattgagtggatgggacaagaaaacccgttat 500
Query: 301 tgggtgacaggagtactatgtatcctggtgtggtgcttgcttaggtgttaacacagttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtgacaggagtactatgtatcctggtgtggtgcttgcttaggtgttaacacagttag 560
Query: 361 actccattgtcagcttggaacacctcagagaatagaccctcaattgagaaaaaggtctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actccattgtcagcttggaacacctcagagaatagaccctcaattgagaaaaaggtctat 620
Query: 421 aggattggcctatgcctatctctgagggggaactttaaaatgctaattgatttaggaggg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggattggcctatgcctatctctgagggggaactttaaaatgctaattgattt------- 673
Query: 481 attagttccctgtgggtggtgccatccctgggcaggtggtcctggattataaaaggaaga 540
Sbjct: 673 ------------------------------------------------------------ 673
Query: 541 cagctgagcaagccagagagagcaagccagcatgtggccttcctctatggtctctgcttt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ---ctgagcaagccagagagagcaagccagcatgtggccttcctctatggtctctgcttt 730
Query: 601 agttctggactcaagttttctacttgagttcttgcactcacaggccataacagtgaacta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agttctggactcaagttttctacttgagttcttgcactcacaggccataacagtgaacta 790
Query: 661 tggtgtg 667
|||||||
Sbjct: 791 tggtgtg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
