Query= MSMg01no524_f13.b1 MSMg01no524_f13.b1 CHROMAT_FILE:
MSMg01no524_f13.b1 PHD_FILE: MSMg01no524_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:35 2005
(643 letters)
>mm_chr2_144527486_144528528
Length = 1043
Score = 1189 bits (615), Expect = 0.0
Identities = 634/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 5 gaattcacactctgcttagtctctgctacctagcacaataaccactagacatacatagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gaattcacactctgcttagtctctgctacctagcacaataaccactagacatacatagca 940
Query: 65 cacaatagccaataggcatatgtagcatatgacagccactagacatatgtagcacatgat 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cacaatagccaatagacatatgtagcatatgacagccactagacatatgtagcacatgat 880
Query: 125 ag--actggatacatgtagccatggagcacttaaaacataatcctgtgactgaacagaat 182
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 agacactggatacatgtagccatggagcacttaaaacataatcctgtgactgaacagaat 820
Query: 183 tttaagtctttttaattcttataaatttaaactcccctggcttcatggtcctgggtcagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttaagtctttttaattcttataaatttaaactcccctggcttcatggtcctgggtcagc 760
Query: 243 cattccaggcactttgacccttctttcagttaccaggacttcagcctttttcctgtcatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cattccaggcactttgacccttctttcagttaccaggacttcagcctttttcctgtcatg 700
Query: 303 tgttcacttctgtaaaccacactggctctagacacattgtggggtcagaggtgctgctcc 362
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgtttgcttctgtaaaccacactggctctagacacattgtggggtcagaggtgctgctcc 640
Query: 363 caaggtgatcagttaagcaaaaggagaagccaaatatatgtctgttgagcatgatccatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caaggtgatcagttaagcaaaaggagaagccaaatatatgtctgttgagcatgatccatg 580
Query: 423 ggaaagcacaacttttattataacagagctgatgcaaaataaactatcaatgacatgatt 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggaaggcacaacttttattataacagagctgatgcaaaataaactatcaatgacatgatt 520
Query: 483 ctttggtgacatgactcatgacagccagcccctccaaccccacaattaagaataataaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctttggtgacatgactcatgacagccagcccctccaaccccacaattaagaataataaaa 460
Query: 543 tgccagaaaagaaaagaataataaaaatcaaaaaagtataccagtgtgtcagctactttt 602
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtcagaaaagaaaagaataataaaaatcaaaaaagtataccagtgtgtcagctactttt 400
Query: 603 ctccatgaggtaacaaaatacctgataaaagcaatttaaga 643
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctccatgaggtaacaaaatacctgataaaagcaatttaaga 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_f13.g1 MSMg01no524_f13.g1 CHROMAT_FILE:
MSMg01no524_f13.g1 PHD_FILE: MSMg01no524_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:35 2005
(629 letters)
>mm_chr2_144347525_144348550
Length = 1026
Score = 961 bits (497), Expect = 0.0
Identities = 605/657 (92%), Gaps = 34/657 (5%)
Strand = Plus / Plus
Query: 1 caatgtggaatttgaaataaaaatatta---atataggcaacatttattgagctataaac 57
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 177 caatgtgaaattt-aaataaaaatattattaatataggcaacatttattgagctataaac 235
Query: 58 ttaagatttgtggactttatgcctcaataaa--ataca-acatatatatat--ttata-- 110
||||||||| |||||||| |||||||| ||| ||| | | |||||||||| |||||
Sbjct: 236 ttaagatttatggactttgtgcctcaaaaaattatatatatatatatatatgtttatata 295
Query: 111 ---------------cacacacatacacatatatgctgaaattagtgtaactttgtcatt 155
|||||||| ||||| | | ||||||||||||||||||||||||||
Sbjct: 296 ttttacacacacacacacacacacacacacacacgctgaaattagtgtaactttgtcatt 355
Query: 156 aatggccttctgacacattgattctcccaagaagaactgaatgaaatataatgtagctgg 215
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 356 aatggccttctgacacattgattctcccaagaa---ctgaatgaaatataatgtagctgg 412
Query: 216 gagtggtg--gcgtatgcctttt-atcccagcactcaggaggcagaagcaggtagatctc 272
|| ||||| || | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaatggtgttgc--acgcctttttatcccagcactcaggaggcagaagcaggtagatctc 470
Query: 273 tgagttcatgtcaacctggtctacagaaagagttccaagatagccagggctatatagaga 332
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgagtttatgtcaacctggtctacagaaagagttccaagatagccagggctatatagaga 530
Query: 333 aacctgtctctaagaacaaaagatagcacatatatgtataccaatattagtgtggttcta 392
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 531 aacctgtctctaagaacaaaagatagcacatatatgtgtaccaatattagtgtggttcta 590
Query: 393 ctgtgcttgtttgcctaccatgctcttaacttacttagagacagcaacagctttaacttg 452
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 591 ctatgcttgtttgcctaccatgcttttaacttacttagagacagcaacagctttaacttg 650
Query: 453 aatttttccatcaggcagagtaataggttttacatatttaaatgtattattttcaccaga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aatttttccatcaggcagagtaataggttttacatatttaaatgtattattttcaccaga 710
Query: 513 accaactttctttaggaagtcaggtttgctgccatccagggtgtaatatatgttgacatc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 accaactttctttaggaagtcaggtttgctgccatccagggtgtaatatatgttgacatc 770
Query: 573 tggggtgtctgaaaaaaaaccaaaacaggagaaccataattaacactgaaataacaa 629
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 771 tggggtgtctgaaaaaaatccagaacaggagaaccataattaacactgaaataacaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1026
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1016
Effective search space: 628904
Effective search space used: 628904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
