BAC Information

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BAC

Clone NameMSMg01-524I04
Chromosome2 (Build37)
Map Location 86,797,734 - 86,798,326
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098
Downstream geneOlfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524I04.T7 (MSMg01no524_i04.b1)MSMg01-524I04.TJ (MSMg01no524_i04.g1)
ACCAG594571AG594572
length755753
length of high quality
(start - end)		710 (36 - 745)656 (55 - 710)
definitionCHROMAT_FILE: MSMg01no524_i04.b1 PHD_FILE: MSMg01no524_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:49 2005CHROMAT_FILE: MSMg01no524_i04.g1 PHD_FILE: MSMg01no524_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATA
GCTGTGGATCAAACCAGGCCTGTTTCAGGAGCCTTTTGACGGTCTTGATA
ATCTAAAGTACTCACACTATCTTATCTGTGTAGCATTTAGCATGACTGTT
CTTCAACACAATTTTCTCAGAGTTAAAATCAGCCTTAGTGGGCGTTGGGA
GAAATGAGGACCTTCAGACAATTCTGGTAGTATAAAATTGGTTATGTCTG
TTAGAAGCCATGTTCAGAAAGTGGAAAAGAAGTCCACTTTGACCCAGTGC
TTCCAGAACAAGGAGGAGTTATCCACAGAGTTTAGGGCGTTCAGGGTTGT
AGTGGTCCTCAGAGCAGCCCTGAAGGAGAAGCTATCCTGATGTCCATCTG
CTGAAGGATGAAAAGGCCCTGTGTGGTGCAGCCCTTCCATGAACTCAGTG
TGAGATAATCCATGCAAGCTTTTGTCCTTCAAATTGTCAGCCTTATCCTA
CTCAAAATAGCTCTGACACAGTCACGTTCTAGGGAGAAAAATGTTCCTTT
GCATCCTGGTTGTAGACAGTTCCTATTACTCTGGGCTCATACCTTTGGAC
ACCAAGTCAGTAAGGTGATGGAAAAGGGAGATCCTATTGGAAGAAACTGT
TTACTTTGGGACAAGTCTGAAACAGTGAGCAACAACAAGAGACTGGTCCA
TCACCAACATGTGACCCTAGGCTGGGAAAAAACCTATTCTACACAGCCTT
GGGAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCAATTCCAGAAAAATGTGGTAAGATTATGTATAAAATTATTT
GAGAATATAATAATAAAAGTCATCATTTAATACTGCAAAACTTATATTTT
TGCCATATATTAATGCATATTGCTTTACATGAAACAATCCTTACTTTTAT
GCAAAAGCTATTGATTGATGTTTTAGAAATTATTTTCAGTTAAACTGAAT
AACAAACACAAATAACTGAAAAATTCAGTACTTCTAAAGTTTAAATTTCA
AATAAATTATTAAAATAGAATTAAGTTATAGTCAAATATTGTTTGCAACT
AAAAACTGACATTTTTACCAATAGTCACACTGTAACAATTATTGACATTC
TAACATATATTCTTCTTAGTCTAATAATGTGAATACACACATTTGTATGA
CAAAGACACAAAGTTTTGCTATTTTCTCCATACTTTGATTCAGCATTTTC
ATTCATCTAAATGATTTTTGTACTATTGGAATTACTATGCAATTTAATAT
CAAAATGTCAATTTTTTATTATCTCTTAGGCAATTCACATTGTCAGTGAA
TGTGTAATCAGTACACTATTCTCATCTTGCATTGCTTCAAATATGATATA
TTGTAAATTTATTGAGTCACAAATCTGCATAATCTAAATTCTTTGTATAT
GTTTCTGGTAAGTGTTTTAGAAACACAATCACTTGGATAAATATCAAAAA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_i04.g1 MSMg01no524_i04.g1 CHROMAT_FILE:
MSMg01no524_i04.g1 PHD_FILE: MSMg01no524_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:49 2005
         (656 letters)



>mm_chr2_86797271_86798326
          Length = 1056

 Score = 1123 bits (581), Expect = 0.0
 Identities = 590/593 (99%)
 Strand = Plus / Minus

                                                                        
Query: 64   agtcatcatttaatactgcaaaacttatatttttgccatatattaatgcatattgcttta 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 agtcatcatttaatactgcaaaacttatatttttgccatatattaatgcatattgcttta 997

                                                                        
Query: 124  catgaaacaatccttacttttatgcaaaagctattgattgatgttttagaaattattttc 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  catgaaacaatccttacttttatgcaaaagctattgattgatgttttagaaattattttc 937

                                                                        
Query: 184  agttaaactgaataacaaacacaaataactgaaaaattcagtacttctaaagtttaaatt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 936  agttaaactgaataacaaacacaaataactgaaaaattcagtacttctaaagtttaaact 877

                                                                        
Query: 244  tcaaataaattattaaaatagaattaagttatagtcaaatattgtttgcaactaaaaact 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 876  tcaaataaattattaaaatagaattaagttatagtcaaatattgtttgcaactaaaacct 817

                                                                        
Query: 304  gacatttttaccaatagtcacactgtaacaattattgacattctaacatatattcttctt 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  gacatttttaccaatagtcacactgtaacaattattgacattctaacatatattcttctt 757

                                                                        
Query: 364  agtctaataatgtgaatacacacatttgtatgacaaagacacaaagttttgctattttct 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  agtctaataatgtgaatacacacatttgtatgacaaagacacaaagttttgctattttct 697

                                                                        
Query: 424  ccatactttgattcagcattttcattcatctaaatgatttttgtactattggaattacta 483
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 696  ccatactttgattcagcattttcattcatctaaatgatttttgtactattggaagtacta 637

                                                                        
Query: 484  tgcaatttaatatcaaaatgtcaattttttattatctcttaggcaattcacattgtcagt 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  tgcaatttaatatcaaaatgtcaattttttattatctcttaggcaattcacattgtcagt 577

                                                                        
Query: 544  gaatgtgtaatcagtacactattctcatcttgcattgcttcaaatatgatatattgtaaa 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  gaatgtgtaatcagtacactattctcatcttgcattgcttcaaatatgatatattgtaaa 517

                                                                 
Query: 604  tttattgagtcacaaatctgcataatctaaattctttgtatatgtttctggta 656
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  tttattgagtcacaaatctgcataatctaaattctttgtatatgtttctggta 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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