Query= MSMg01no524_i07.b1 MSMg01no524_i07.b1 CHROMAT_FILE:
MSMg01no524_i07.b1 PHD_FILE: MSMg01no524_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:49 2005
(694 letters)
>mm_chr2_162817201_162818292
Length = 1092
Score = 1255 bits (649), Expect = 0.0
Identities = 677/687 (98%), Gaps = 2/687 (0%)
Strand = Plus / Minus
Query: 8 gaattcttgtgggtactcccaggctaagctctgtgacgaagacaaccttctgaaccctgt 67
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 892 gaattcttgtgggtactcacaggctaagctctgtgatgaagacaaccttctgaaccttgt 833
Query: 68 actttctccagtgtccattaacagcagctacactggggactttggaccagaatcacagaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 actttctccagtgtccattaacagcagctacactggggactttggaccagaatcacagaa 773
Query: 128 ttccccaagtagccagtgtctatatgaggtcaaatggtagaagcagtgggcagctggtct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttccccaagtagccagtgtctatatgaggtcaaatggtagaagcagtgggcagctggtct 713
Query: 188 atgtagccagcagcacagtggaagtatctgactgtctaggatttggatcagggccttgga 247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atgtagccagcaacacagtggaagtatctgactgtctaggatttggatcagggccttgga 653
Query: 248 acctcagagaccctacccctctcacagggataggtgcagattgttcatctaaagacccca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acctcagagaccctacccctctcacagggataggtgcagattgttcatctaaagacccca 593
Query: 308 gttttgattgctgtggagcctgggctatgtagatcttagatcttagatcactggatttcc 367
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 592 gttttgattgctgtggagcctggactatgtagatcttagatcttagatcactggatttcc 533
Query: 368 aaggaaggtcttagaggcaccactcctgtagctgggtgggacactgaagcccattcacct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaggaaggtcttagaggcaccactcctgtagctgggtgggacactgaagcccattcacct 473
Query: 428 gtggccaggaacttccaccaggtcagaggccaccaccagcagagaaagtagcttcagggg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtggccaggaacttccaccaggtcagaggccaccaccagcagagaaagtagcttcagggg 413
Query: 488 aagggagggtattcccctgctaggctgacctagaggctcatcactattgaatccccgcac 547
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 412 aagggagggtattcccctgctaggctgacctagaggctcatcactattgaattcccgcac 353
Query: 548 agttgtagaattaattccaccagagggagtgcatcccggcctctctgatgcacaccaggc 607
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 352 agttgtagaattaattccaccagagggagtgcatcccagcctctctgatgcacaccaggc 293
Query: 608 tgtgctcccccgcagcctgtctgtgacatcaccacccctccccaggtggtccccaacggg 667
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgtgct--ctcgcagcctgtctgtgacatcaccacccctccccaggtggtccccaacggg 235
Query: 668 tccagtgcccagccccagctccctggg 694
|||||||||||||||||||||||||||
Sbjct: 234 tccagtgcccagccccagctccctggg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1092
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1082
Effective search space: 740088
Effective search space used: 740088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_i07.g1 MSMg01no524_i07.g1 CHROMAT_FILE:
MSMg01no524_i07.g1 PHD_FILE: MSMg01no524_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:49 2005
(575 letters)
>mm_chr2_162714909_162715883
Length = 975
Score = 1050 bits (543), Expect = 0.0
Identities = 567/575 (98%)
Strand = Plus / Plus
Query: 1 tttctgcccatctcccacacagaggcttggctgagtcatgtgatttgcctcagccaatag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgcccagctcccacacagaggcttggctgagtcatgtgatttgcctcagccaatag 260
Query: 61 gatgttagcaccacaggctctggcaaaggttgggaaagcccctgggcttagaaggcgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgttagcaccacaggctctggcaaaggttgggaaagcccctgggcttagaaggcgagg 320
Query: 121 ttagctgtcttttgcagtgctttggtatcggtcaaagggaaagagcccaaagtggcttgc 180
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 321 ttagctgtcttttgcagtgctttggtatcggtcaaagagaaagagcccaaactggcttgc 380
Query: 181 tagaggaagggaaccactcagagacacgtacagagaggcatcccccacagcttagatggt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tagaggaagggaaccactcagagacacgtacagagagacatcccccacagcttagatggt 440
Query: 241 cagtccatcaaacagcagccagccgccaggccgtcttcagacacatctcagacccagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtccatcaaacagcagccagccgccaggccgtcttcagacacatctcagacccagcag 500
Query: 301 aatcctgcagacctgtgagcaaccccagactaggctcaaaagaccaccacactgagccct 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aatcctgcagacctgtgagcaaccccaaactaggctcaaaagaccaccacactgagccct 560
Query: 361 ctccacctcgcaccttccccaccccctaccccgtggaactgccagactacacaactgcag 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccacctcgcaccttccccaccccctaccccgtggaactgccagactacacaactgcag 620
Query: 421 tttaaataaatggttacataaagcccgccacagcaaagcagaggatggagtcatatcccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaataaatggttacataaagcccgccacagcaaagcagaggatggagtcatatcccg 680
Query: 481 tagagcatgatttagcaggtggtcaaggaagacagagccaagccgagagaacagaatatt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagagcatgatttagcaggtagtcaaggaagacagagccaagccgagagaacagaatatt 740
Query: 541 tacatacgcgggtgggcacagaaggccttgctctc 575
||||||||||||||||||| |||||||||||||||
Sbjct: 741 tacatacgcgggtgggcacggaaggccttgctctc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
