BAC Information

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BAC

Clone NameMSMg01-525B05
Chromosome2 (Build37)
Map Location 137,559,257 - 137,731,336
singlet/doubletdoublet
Overlap genenone
Upstream geneSnap25, LOC668911, Mkks, 2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525B05.T7 (MSMg01no525_b05.b1)MSMg01-525B05.TJ (MSMg01no525_b05.g1)
ACCAG595001AG595002
length743753
length of high quality
(start - end)		656 (57 - 712)577 (71 - 647)
definitionCHROMAT_FILE: MSMg01no525_b05.b1 PHD_FILE: MSMg01no525_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:33 2005CHROMAT_FILE: MSMg01no525_b05.g1 PHD_FILE: MSMg01no525_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,559,257 - 137,559,911)(137,731,017 - 137,731,336)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ACAGTACCGTCTGATCATATAATATAATTACCCCAACTCCTTCCATAATT
ATTCTCTTTACCTGCGATTTCCCATCCACCAAACTTTGAGTTTTTCTTTT
TTTCATTTTCTTCCTTTCTTTATGTGAGGGTTCCTCTGCAGTGTAGTCAA
CCTACCATGGGTCAAGACAAGACATGCCATCATGTGATGTCAAAGCTGGC
TCTCCTTCTTCTCGAAGCTATCAAATGCCAATAGTTTCCTCTAGGATTTT
GATTCCATGTCTCTCCTTCCACGTTGAGCTTGTGCCTCACCACAGCCTGT
GCAATTCCATCCGACCTATGGCTGAGCATTCCACCATCTCTTACTGTCAA
CCTGTTATAAAGTTAAGGGCTTTTATCTTTGCTGATGAGGGTGGGTAGTG
GTACCGTTTTATGAGTAGAGATCATTATGAGTCATTTTATAATATGGCCA
TTTAGCAGAAAACCAGTAGTAGGTTCTCCTTTAGGGCTTATAACATATCT
AGGCACATGTTGACAGTGCCTTTTAACAGTCACAGAAAAGGATTTCATCT
CAGGGAGAGTACCTAACAGCCAATAAGAAAGTGATTGGTTAGGTTGGAGA
GATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAACGGTCCCGAGTT
CAAATCCCAGCAACCACATGGTGGCTCATAACCATCCTGTATG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATACATGAATATTATATTTACATTACCAT
CAAAAAAGTCATGAACGTGATAATGAGTTGGGTGGTAATTGGGAGGAGTT
GCAGGGTAGAGGAAAGGGTAGAAATGATGTATAAATTCAGTGTCTTGGGG
CTTCTATTCCTGAACAAATATCATGAACAAGAAGCAAGTTGAGGAGGAAA
AGATTTATTCAGTTTACATTTCCACATTGCTTTTAATCAACAAAGGAAGT
ATGGACTGGACTCAAGCAGGTCAGGAAGCAATGCAGAAGCCATGGAGGGA
TGTTACTCACTGGATTGTTCCCCTGGCTTGCTCAGCTTGCATTTTTTATA
GAATCCAAGACTATCAGCCCAGGGATGGCACCGCCCACAATGGGCCCTCC
CATTATTGATCACTAATGTCTATGAGCTGGAGCTCATAGAGACATTTCCT
CAAGGGAAGCCCCTTTCTCTGTGATAACTCTAGCTTGTGTCAAGTTGATA
CACAAAACCAGCCAGTACAACTGACCACTTGTCAACTTGACACACAAACA
CATCACTAGTAAGCCTCAACCCTTACTTTCTTATTCATCCCCAAGATCTA
AATAACTTTAGAAGTCCCACAGTCTTGACAAATTCTTATATATTATAAAT
TCAATCCCTTTACATATCCAATCTCCTTTAAATTTAAAGATTTTCTGCCA
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_b05.b1 MSMg01no525_b05.b1 CHROMAT_FILE:
MSMg01no525_b05.b1 PHD_FILE: MSMg01no525_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:33 2005
         (656 letters)



>mm_chr2_137559056_137560111
          Length = 1056

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   cgtctgatcatataatataattaccccaactccttccataattattctctttacctgcga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cgtctgatcatataatataattaccccaactccttccataattattctctttacctgcga 261

                                                                       
Query: 62  tttcccatccaccaaactttgagtttttctttttttcattttcttcctttctttatgtga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttcccatccaccaaactttgagtttttctttttttcattttcttcctttctttatgtga 321

                                                                       
Query: 122 gggttcctctgcagtgtagtcaacctaccatgggtcaagacaagacatgccatcatgtga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggttcctctgcagtgtagtcaacctaccatgggtcaagacaagacatgccatcatgtga 381

                                                                       
Query: 182 tgtcaaagctggctctccttcttctcgaagctatcaaatgccaatagtttcctctaggat 241
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 tgtcaaagctggctctccttcttctcaaagctatcaaatgccaatagtttcctctaggat 441

                                                                       
Query: 242 tttgattccatgtctctccttccacgttgagcttgtgcctcaccacagcctgtgcaattc 301
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttgttttcatgtctctccttccacgttgagcttgtgcctcaccacagcctgtgcaattc 501

                                                                       
Query: 302 catccgacctatggctgagcattccaccatctcttactgtcaacctgttataaagttaag 361
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 catccgatctatggctgagcattccaccatctcttactgtcaacctgttataaagttagg 561

                                                                       
Query: 362 ggcttttatctttgctgatgagggtgggtagtggtaccgttttatgagtagagatcatta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcttttatctttgctgatgagggtgggtagtggtaccgttttatgagtagagatcatta 621

                                                                       
Query: 422 tgagtcattttataatatggccatttagcagaaaaccagtagtaggttctcctttagggc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgagtcattttataatatggccatttagcagaaaaccagtagtaggttctcctttagggc 681

                                                                       
Query: 482 ttataacatatctaggcacatgttgacagtgccttttaacagtcacagaaaaggatttca 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 682 ttataacatatctaggcacatgttgacagtgccttttaacagtcacagaaaaagatttca 741

                                                                       
Query: 542 tctcagggagagtacctaacagccaataagaaagtgattggttaggttggagagatggct 601
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctcagggagagtacctaagagccaataagaaagtgattggttaggttggagagatggct 801

                                                                  
Query: 602 cagcagttaagagcactgactgctcttccaacggtcccgagttcaaatcccagca 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cagcagttaagagcactgactgctcttccaacggtcccgagttcaaatcccagca 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_b05.g1 MSMg01no525_b05.g1 CHROMAT_FILE:
MSMg01no525_b05.g1 PHD_FILE: MSMg01no525_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:33 2005
         (577 letters)



>mm_chr2_137731017_137731993
          Length = 977

 Score =  596 bits (308), Expect = e-174
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacatgaatattatatttacattaccatcaaaaaagtcatgaacgtgataatgagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catacatgaatattatatttacattaccatcaaaaaagtcatgaacgtgataatgagttg 261

                                                                       
Query: 61  ggtggtaattgggaggagttgcagggtagaggaaagggtagaaatgatgtataaattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggtggtaattgggaggagttgcagggtagaggaaagggtagaaatgatgtataaattcag 201

                                                                       
Query: 121 tgtcttggggcttctattcctgaacaaatatcatgaacaagaagcaagttgaggaggaaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 200 tgtcttggggcttctattcctgaacaaatatcatgagcaagaagcaagttgaggaggcaa 141

                                                                       
Query: 181 agatttattcagtttacatttccacattgcttttaatcaacaaaggaagtatggactgga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 140 agatttattcagtttacatttccacattgcttttcatcaacaaaggaagtatggactgga 81

                                                                       
Query: 241 ctcaagcaggtcaggaagcaatgcagaagccatggagggatgttactcactggattgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ctcaagcaggtcaggaagcaatgcagaagccatggagggatgttactcactggattgttc 21

                               
Query: 301 ccctggcttgctcagcttgc 320
           ||||||||||||||||||||
Sbjct: 20  ccctggcttgctcagcttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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