Query= MSMg01no525_c22.b1 MSMg01no525_c22.b1 CHROMAT_FILE:
MSMg01no525_c22.b1 PHD_FILE: MSMg01no525_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:42 2005
(528 letters)
>mm_chr2_101106274_101107204
Length = 931
Score = 919 bits (475), Expect = 0.0
Identities = 518/539 (96%), Gaps = 13/539 (2%)
Strand = Plus / Plus
Query: 3 cggaattcc-aagtccttgtctctccttccagtcttttccttgagacagttttccagatc 61
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcccaagtccttgtctctccttccagtcttttccttgagacagttttccagatc 262
Query: 62 cacatacagagtatgtcatcttccaggaactgcacactaactggctactctagggctgaa 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 263 cacatacagagtatgtcatcttccaggaactgcacactaactagctactctagggctgaa 322
Query: 122 gacagaagtagatagcaaagagagagacttccagagacaagataagcctaagggaaatgt 181
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 gacagaagtagatagcaaagagagagactttcagagacaagataagcctaagggaaatgt 382
Query: 182 ttgttttttctctctagatattggaagtactagacttaaccccaaaagaagaaatttttc 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 ttgttttttctctctagatattggaagtactagacttaaccccaaaagaagaaaattttc 442
Query: 242 ccatattgcatgctacatacttagaagatttgataagggagaagatacagcaggtgattc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccatattgcatgctacatacttagaagatttgataagggagaagatacagcaggtgattc 502
Query: 302 agtgtgga--ttgtgcccaagttctaaaaagactatcgtacactataatctatctccctt 359
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 agtgtggaatttgtgcccaagttctaaaaagactatcgtacactataatttatctccctt 562
Query: 360 ggctaaatctagtgatgctgcatatgggaattcagcagtcagggcactaaattgtttaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggctaaatctagtgatgctgcatatgggaattcagcagtcagggcactaaattgtttaca 622
Query: 420 tgtctgtcttcttagtggcctcaatttatcattagcaaccattagcaatt---------- 469
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 tgtctgtcttcttagtgacctcaatttatcattagcaaccattagcaattgctacacctt 682
Query: 470 aagaatagacagtgattccaaaggttatatttgtctagctatatttggattattactgc 528
|||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 683 aagaatagacggtgcttccaaaggttatatttgtctagctatatttggagtattactgc 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 931
Length adjustment: 10
Effective length of query: 518
Effective length of database: 921
Effective search space: 477078
Effective search space used: 477078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_c22.g1 MSMg01no525_c22.g1 CHROMAT_FILE:
MSMg01no525_c22.g1 PHD_FILE: MSMg01no525_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:42 2005
(514 letters)
>mm_chr2_101160103_101161016
Length = 914
Score = 957 bits (495), Expect = 0.0
Identities = 501/503 (99%)
Strand = Plus / Minus
Query: 12 taggtctcttgcatcattcacatgatccattattcattcagcagttcataccagaaattt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 taggtctcttgcatcattcacatgatccattattcattcagcagttcataccagaaattt 855
Query: 72 actgataaatttgtgatcaaggggaaattgcattattgttaggataaataaatataattt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 actgataaatttgtgatcaaggggaaattgcattattgttaggataaataaatataattt 795
Query: 132 gagagctaggaatgtagctcagtgatggagtgcttgcttagtatgcatgaggccttgggt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gagagctaggaatgtagctcagtgatggagtgcttgcttagtatgcatgaggccttgggt 735
Query: 192 tggatccccagtactgaaaacatgttatttggaagggacacatcaatattaataagcagc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggatccccagtactgaaaacatgttatttggaagggacacatcaatattaataagcagc 675
Query: 252 ttcttatttgtacagtgaatgtggccttgcctgctgcggatgtgctgttacaatggctct 311
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 674 ttcttatttgtacagtgaatgtggccttgcctgctgcggatgtgctgttacgatggctct 615
Query: 312 aggaaactcactgagggcaaatggtcagtactgatcttcctttctgtctgaaggcctgtc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggaaactcactgagggcaaatggtcagtactgatcttcctttctgtctgaaggcctgtc 555
Query: 372 ctctttgtatatgattgatacctattatgcttcctgtaaagggtagtccctgtgaaacct 431
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctctatgtatatgattgatacctattatgcttcctgtaaagggtagtccctgtgaaacct 495
Query: 432 actgcataagggctaaagggagagtgatttgtgactgttaggggagcataagagaaatct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 actgcataagggctaaagggagagtgatttgtgactgttaggggagcataagagaaatct 435
Query: 492 gccttgagtaatgcttatgtccc 514
|||||||||||||||||||||||
Sbjct: 434 gccttgagtaatgcttatgtccc 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
