Query= MSMg01no525_g08.b1 MSMg01no525_g08.b1 CHROMAT_FILE:
MSMg01no525_g08.b1 PHD_FILE: MSMg01no525_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:59 2005
(491 letters)
>mm_chr2_27378997_27379885
Length = 889
Score = 837 bits (433), Expect = 0.0
Identities = 471/487 (96%), Gaps = 7/487 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggacttccagggctacacagagaaaccctgtctggaaaaaccaaaaaaaaaa 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccaggacagccagggctacacagagaaaccctgtctggaaaaaccaaaaaaaaaa 269
Query: 65 aaaaaggggggggggctaggtctgtgccaagttgatgactcaattaatgcccagccttga 124
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 -----gggggggggcctaggtctgtgccaagttgatgactcaattaatgcccagccttga 324
Query: 125 agccctttcatatactctctccctagctatagcctttgcctgtatcagtgtcccctcagc 184
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcccttttgtatactctc--cctagctatagcctttgcctgtatcagtgtcccctcagc 382
Query: 185 cgttcactgtgtctcatccccagtagggagtcctgttgactggtacgctgtgggctcgct 244
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 383 cgttcactgtgtctcatccccagtagggagtcctgttgactggtaccctgtgggctggct 442
Query: 245 tgcttgtttctccaagctgctacctgcacattgtctgcatggaaacgtcgggggcccatg 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 tgcttgtttctccaagctgctacctgcacattggctgcatggaaacgtcgggggcccatg 502
Query: 305 tttgccccttaccccattatgtttgacaatttgtttcgtatattaaaagtagaggtaaat 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgccccttaccacattatgtttgacaatttgtttcgtatattaaaagtagaggtaaat 562
Query: 365 gtgggtagttagttgtattgcctgacctaaggaaggaactctagtgactgacagttgtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgggtagttagttgtattgcctgacctaaggaaggaactctagtgactgacagttgtgg 622
Query: 425 ctgagtagctgttcaggatctgacatgcacttgtcaacaggagaaagtgacctctggctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgagtagctgttcaggatctgacatgcacttgtcaacaggagaaagtgacctctggctc 682
Query: 485 tagtgct 491
|||||||
Sbjct: 683 tagtgct 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 889
Length adjustment: 10
Effective length of query: 481
Effective length of database: 879
Effective search space: 422799
Effective search space used: 422799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_g08.g1 MSMg01no525_g08.g1 CHROMAT_FILE:
MSMg01no525_g08.g1 PHD_FILE: MSMg01no525_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:59 2005
(522 letters)
>mm_chr2_27438388_27439309
Length = 922
Score = 944 bits (488), Expect = 0.0
Identities = 512/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 4 gagaaataaagctggggcaggagagatggcccagtagttaagagcactggctgttcttaa 63
|||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 907 gagaaagaaagctggggcaggagagatggcccagcagttaagcgcactggctgttcttaa 848
Query: 64 ccaaaagactcaggttcaattcctagcacccacatgggagctcacaactctttttaactc 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ccaaaagactcaggttcaatttctagcacccacatgggagctcacaactctttttaactc 788
Query: 124 cagttccagagaatctgatgccctcacacagacatatatgcaagcagaataacaatgtac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cagttccagagaatctgatgccctcacacagacatatatgcaagcagaataacaatgtac 728
Query: 184 ataaatgctgattggctctgcagttccaattccagtctaagctctgtgtcccccaccacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ataaatgctgattggctctgcagttccaattccagtctaagctctgtgtcccccaccacc 668
Query: 244 atcctccatgggtttaatcctggtgttggtttatttacagtgtagtagaaatcacgggga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atcctccatgggtttaatcctggtgttggtttatttacagtgtagtagaaatcacgggga 608
Query: 304 gacatggaggagggcagtgcatgcctaacagagtcctgccttccagctagagtagaaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gacatggaggagggcagtgcatgcctaacagagtcctgccttccagctagagtagaaagc 548
Query: 364 caa-ccctcacaggctgctttcccaagccagagaaaactggaagtggtccaggttagtta 422
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caacccct-acaggctgctttcccaagccagagaaaactggaagtggtccaggttagtta 489
Query: 423 gtaaggaccccatgttgcacattggcagccaaacctttggaaggagtccctaccccaagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtaaggaccccatgttgcacattggcagccaaacctttggaaggagtccctaccccaagg 429
Query: 483 accctgccctgggcttcaggaccagtagccaatgcaggcc 522
||||| |||||||||| |||||||||||||||||||||||
Sbjct: 428 accctaccctgggctttaggaccagtagccaatgcaggcc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
