Query= MSMg01no525_i17.b1 MSMg01no525_i17.b1 CHROMAT_FILE:
MSMg01no525_i17.b1 PHD_FILE: MSMg01no525_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(639 letters)
>mm_chr2_4013415_4014457
Length = 1043
Score = 795 bits (411), Expect = 0.0
Identities = 426/433 (98%), Gaps = 4/433 (0%)
Strand = Plus / Minus
Query: 208 tattattctataggttgagtgaaaagtagacaggagagagatgccaacattcctccttct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 tattattctataggttgagtgaaaagtagacaggagagagatgccaacattcctccttct 984
Query: 268 ctgcttcttgactgtgaactcaacatgaccagctatctgccacacctgccaccatacctt 327
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 983 ctgcttcttgactgtgaactcaacatgaccagctatctgccacacttgccaccatacctt 924
Query: 328 ccccaccatgatggactgtatccctaagaactgcgagccaagataaacccccactttatt 387
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 923 ccccaccatgatggactgtatccctaagaactgcgagccaagataaaccccccctttatt 864
Query: 388 aagttgccctttgtcaggtatttagctgtgctttagacaatgcttttctatcagagtgag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aagttgccctttgtcaggtatttagctgtgctttagacaatgcttttctatcagagtgag 804
Query: 448 aagccacgggcagacttatgacacaagatgtaaataattatatcatataaccaagatcaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aagccacgggcagacttatgacacaagatgtaaataattatatcatataaccaagatcaa 744
Query: 508 gaattacttgctattacagtgtagcctagcctgattttactataaaataaaacaaaacta 567
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 gaattacttgctattacagtgtagcctagcctggttttactataaaataaaacaaaacta 684
Query: 568 tatactaatgcaatttatataatgtgcaatatcgtaatgaccctgtaaag----agcata 623
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 683 tatactaatgcaatttatataatgtgcaatatcgtaatgaccctgtaaagagacagcata 624
Query: 624 tcctatttttttt 636
|||||||||||||
Sbjct: 623 tcctatttttttt 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1043
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1033
Effective search space: 649757
Effective search space used: 649757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_i17.g1 MSMg01no525_i17.g1 CHROMAT_FILE:
MSMg01no525_i17.g1 PHD_FILE: MSMg01no525_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(550 letters)
>mm_chr2_3834021_3834967
Length = 947
Score = 808 bits (418), Expect = 0.0
Identities = 501/550 (91%), Gaps = 35/550 (6%)
Strand = Plus / Plus
Query: 1 catgagtctagggtcagtcacaaatactgtttggactcttgtgataaaatagactcacag 60
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagtctggggtcagtcacaattactgtttggactcttgtgataaaatagactcacag 260
Query: 61 ggttcatactctggcacagaaggcaggcaaggagtatataatgacaactcattaaatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttcatactctggcacagaaggcaggcaaggagtatataatgacaactcattaaatgct 320
Query: 121 tgcttacagtaggtgagctgctgtgaagtttgaactgggtaccgtgaggatgtgtttcag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttacagtaggtgagctgctgtgaggtttgaactgggtaccgtgaggatgtgtttcag 380
Query: 181 atttgcagagggagtgaggtaggcatttttgaggcagctgaagctgaactatgggattgt 240
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 acttgcagagggagagaggtaggcatttttgaggcagctgaagctgaactatggga--gt 438
Query: 241 gtgtgtgtctagcatgatgtagcataggaactaattttattgtagtataatacatgcctg 300
||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 439 gtgtgtgtctagcataatgtagcat-ggaactaattttattgtggtataatacatgcctg 497
Query: 301 tccccataacctgtgctccaatgacagctcacctgctcttacctgctctcatgtagacaa 360
|| |||||||||| |||||||||||||||
Sbjct: 498 tctccataacctg--------------------------------ctctcatgtagacaa 525
Query: 361 tcatttgtcataatatctttccatcctctgagtcattcaaacacgaatgaagtgatgagg 420
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 526 tcatttgtcataatatatttccatcttctgagtcattcaaacacaaatgaagtgatgagg 585
Query: 421 cctgtgctcaggtcaaaggccagagggaatagcagagactttcttcaaccttgaatcttg 480
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cctgtgctcaggtcaacggacagagggaatagcagagactttcttcaaccttgaatcttg 645
Query: 481 actgtctatagatttttgttttattttaattttggtattgggtgttttgcctgtatgtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 646 actgtctatagatttttgttttattttaattttggtattgggtgttttgcctgcatgtat 705
Query: 541 atatgtgctc 550
||||||||||
Sbjct: 706 atatgtgctc 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 947
Length adjustment: 10
Effective length of query: 540
Effective length of database: 937
Effective search space: 505980
Effective search space used: 505980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
