BAC Information

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BAC

Clone NameMSMg01-525J16
Chromosome2 (Build37)
Map Location 78,977,571 - 79,144,828
singlet/doubletdoublet
Overlap geneLOC100040526, Itga4
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneCerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525J16.T7 (MSMg01no525_j16.b1)MSMg01-525J16.TJ (MSMg01no525_j16.g1)
ACCAG595399AG595400
length778776
length of high quality
(start - end)		625 (33 - 657)580 (66 - 645)
definitionCHROMAT_FILE: MSMg01no525_j16.b1 PHD_FILE: MSMg01no525_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:17 2005CHROMAT_FILE: MSMg01no525_j16.g1 PHD_FILE: MSMg01no525_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,144,459 - 79,144,828)(78,977,571 - 78,978,150)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAATTCTGTTT
TTTCATCCTTGAATAAAATGACTCTCAATGTTTGTTCATCCTGTAAAATT
TACATTTCTCATCCCTATGCCATCTCTAATGTGTAGAGGGAATTCTAAAT
ATGATATTGAGAGTGATTTTCAAGTAAGGAGCCATGTACCAGAGCTCCAT
TTTCTTAGGTAAGATTCCTATTGCTGTGATAAAACATCATGACCAAAATC
AACTTGGGGAAGAAAGGATTCATTTTCTCTTATAGCTTGTAGTCCATCAT
CCAGGGAACTCCAGACAAGAACCTTGAGGCAGGAGCTGATGCAGAGGCTA
TGAAAAAGAGACTTTGTGCAGCCTGTTTTCTTGTAGAATCCAGGACCACC
AGCCAGCCCAGGGACGGCACTTGTCCACACTGGCTAAGCCTTCCCAAATC
AATCAGTCAATGAAGAAATTCGTCACAAGCTTGCCTGTAGGCCAATCTTG
TGGAGCCATTGTCTATTGGCACTTCCTTTTCCCCAATGCTCTTCTTGTGT
TAAATTGACATAAAACTACATAGTTGCATGGTTTGCTTATGTCCCACCTT
CTAATCTAGTTTCTCATTCCTGCTCCTGGTCACTCTGTATCCTTAACCTT
TTTTCATTTCCCATTGTCTATAGATGTGCAAAGCAAATTGAATGTAGTGA
AACTCTACATGATACGTAAATGCAGGTTTTTCCATTATAAAGTAACAGGA
GACATTTCCTATTTACCTAGGTCTTCCN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGAATCCTTAAAATAATGCTTGCAGCCTTTCAGA
TACAGAAACATGTTTGTGAGGAAACATTTAAATAAACATGAGTTGCAGGA
GAATAGCATATAGATAGAATGACTGAGAGGTATAAAAATGGAAACTGGCA
TTTTCAAAATAAATTCTAGTAATCTAAGAATCATTCAAGTCAGCCCAGTA
TGGATAGTCTTGGGCAGTCAGAATACGAATTTGAACAGGTTTCCGAATGG
CAGCTTTGGGGCATACGATACAAGTTTGACTTTCAACTCTTCCACCACCT
TTGAATGTCTAAAGAGAGCTCCTCGGTTGCTCAAAGCCTTGGTTTTCCTT
ATCTGCAAAAAAGAGGAAACACTGTGCTATGGAAGCATAGTTTTTGAAGG
GTGAGATGGGCCCACTTCAAGACATGTGACTAGAGGTGAATTCCCTCTCC
CAGTATCTCCCCCACAGCTGGAAAATATTCCAGAAAACACCTGTCAGAAT
GCGGAAACTGAGCATGCAAAAATGCAAAGACAATAGTGACACTGGCAACA
GATTCTAAAACGGAGAGATGACAAGAGCCAGATGCTGGACACCTGCTCCA
TGCTCAGTCACCAACTCTGAAACCAGAACTCAGTGCCAAAACAGCAAGAC
AGACGTGTTCATATCCCACGCGTTTCAGAGCTCTCTCTCTCTCTCTCAGC
CTGTCATTTCCTGTTTGCTTTTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_j16.b1 MSMg01no525_j16.b1 CHROMAT_FILE:
MSMg01no525_j16.b1 PHD_FILE: MSMg01no525_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:17 2005
         (625 letters)



>mm_chr2_79144459_79145483
          Length = 1025

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 23  atccttgaataaaatgactctcaatgtttgttcatcctgtaaaatttacatttctcatcc 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atccttgaataaaatgactctcaatgtttgttcatcctgtaaaatttacatttctcatcc 311

                                                                       
Query: 83  ctatgccatctctaatgtgtagagggaattctaaatatgatattgagagtgattttcaag 142
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 310 ctatgccatctctaatgtgtagagggaattctaaatgtgatattgagagtgattttcaag 251

                                                                       
Query: 143 taaggagccatgtaccagagctccattttcttaggtaagattcctattgctgtgataaaa 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taaggagccatgtaccagagctccattttcttaggtaagattcctattgctgtgataaaa 191

                                                                       
Query: 203 catcatgaccaaaatcaacttggggaagaaaggattcattttctcttatagcttgtagtc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 catcatgaccaaaatcaacttggggaagaaaggattcattttctcttatagcttgtagtc 131

                                                                       
Query: 263 catcatccagggaactccagacaagaaccttgaggcaggagctgatgcagaggctatgaa 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catcatccagggaactccagacaagaaccttgaggcaggagctgatgcagaggctatgaa 71

                                                                       
Query: 323 aaagagactttgtgcagcctgttttcttgtagaatccaggaccaccagccagcccaggga 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaagagactttgtgcagcctgttttcttgtagaatccaggaccaccagccagcccaggga 11

                     
Query: 383 cggcacttgt 392
           ||||||||||
Sbjct: 10  cggcacttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_j16.g1 MSMg01no525_j16.g1 CHROMAT_FILE:
MSMg01no525_j16.g1 PHD_FILE: MSMg01no525_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:17 2005
         (580 letters)



>mm_chr2_78977371_78978350
          Length = 980

 Score = 1122 bits (580), Expect = 0.0
 Identities = 580/580 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatccttaaaataatgcttgcagcctttcagatacagaaacatgtttgtgaggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatccttaaaataatgcttgcagcctttcagatacagaaacatgtttgtgaggaaac 260

                                                                       
Query: 61  atttaaataaacatgagttgcaggagaatagcatatagatagaatgactgagaggtataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaaataaacatgagttgcaggagaatagcatatagatagaatgactgagaggtataa 320

                                                                       
Query: 121 aaatggaaactggcattttcaaaataaattctagtaatctaagaatcattcaagtcagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatggaaactggcattttcaaaataaattctagtaatctaagaatcattcaagtcagcc 380

                                                                       
Query: 181 cagtatggatagtcttgggcagtcagaatacgaatttgaacaggtttccgaatggcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtatggatagtcttgggcagtcagaatacgaatttgaacaggtttccgaatggcagct 440

                                                                       
Query: 241 ttggggcatacgatacaagtttgactttcaactcttccaccacctttgaatgtctaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggggcatacgatacaagtttgactttcaactcttccaccacctttgaatgtctaaaga 500

                                                                       
Query: 301 gagctcctcggttgctcaaagccttggttttccttatctgcaaaaaagaggaaacactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctcctcggttgctcaaagccttggttttccttatctgcaaaaaagaggaaacactgt 560

                                                                       
Query: 361 gctatggaagcatagtttttgaagggtgagatgggcccacttcaagacatgtgactagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctatggaagcatagtttttgaagggtgagatgggcccacttcaagacatgtgactagag 620

                                                                       
Query: 421 gtgaattccctctcccagtatctcccccacagctggaaaatattccagaaaacacctgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaattccctctcccagtatctcccccacagctggaaaatattccagaaaacacctgtc 680

                                                                       
Query: 481 agaatgcggaaactgagcatgcaaaaatgcaaagacaatagtgacactggcaacagattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgcggaaactgagcatgcaaaaatgcaaagacaatagtgacactggcaacagattc 740

                                                   
Query: 541 taaaacggagagatgacaagagccagatgctggacacctg 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaacggagagatgacaagagccagatgctggacacctg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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