XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTCAGATTTCAGAACTCTTTAGTGGTATTTACATGGTTACATAATCCTAA
CATTTCATCCACAGAAGGCAGTTTGCAAACTTCCTCTTAAGAGACCACAC
TAATCAGAAAATAGAAACTGCAAGACTGTGGAATCTTTGAATGTTTAAAT
ACCCTTTCCGCCTAAATGCAATATAAATCGATTTAATTTTCACTGTCCTA
CAGCAGTGCTGTCCAATAAAAAACAGAGTCAAACTATGTAACTAAAGAGG
GCAGCACTGAATATGGTATGTTACTTCAAGTATAAACACCAACAGATTGA
GTAAAATGTACCCAGAATCAATTTTGTTAGAATCACATGGGTGCAGTGAT
CAAGTAAACTCCAAGTCAAGGAAAGAGAGAGAGAGAAAAAAGCTATCATC
ATCAAGGTTATCCTGGTCTGCATTACTAAGTTCAAGTAGCCTATGTCAAT
TTTGATGGCTGCTCTGCAATTACATGTCAGTAAATTAATAGGTACAATAC
TGGAAGTTTCTTTTAAACTGTAATGGGAGGGGCTGGAGAGATGGGTGAGA
CACACATAAACTAAAATAAAAAAAAATCTTTAAATGTGATAGGACATTAC
TTAGAAAGAAGGCATTCTAACACTTTTATACACCGATGTTCTCATATAAT
AAGTTGAATCAACATTGCCTTTTTTATTTCCTCCAGTTGAATGTTCACCT
CTTTTAT

ATATAATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCAAACATCCCTCCAGGTTAGTCTGGGACTGT
AGCTTTGCAATAAGCATCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAT
GTGTCTGTGTACAGCACCACCTACCACCCCCCCCACTACATCACCCCCCC
CCCCCCTCCCACCCCCAATCAATTTCACCCACCAATCCCCCACCCCCTCA
CTCACACAATCTCTCCCACATCACCTAATACCCCCCCATCATTCCCCCCC
CCCCCCCCATCCACCCACCACCATTTTCCACCCCCCCCCTCTCCCCCCCT
CACCACCTCACTCCAACCCCCTACCAACACACAACTATTCCAACACACAC
AACACCAACCAAACCACCACATATATACACCAATTACACACACTAATCAA
CAAACACACCCACCCCAAAAACCCCCAACCAATCCCACCCAACCCAAAAA
CAACTCTCCTCCTCTACACCCAATTTTTTCCCCATCCCCATCTCCCACCC
CCTACCTACCTAATTTCCCCACACCCCAATCCACCACACCCAACTCTATT
ATTTAACAACACCACTCCCACAACAAACCATTTTAACAAATACCATTACA
TTATTCCACACAACCACTAATTCTTTCAACACCACAAACACACTTCTACT
ATCCTTCACCACATAACCAAACCTTCTCTACCAAACCACCCACACTTTCC
CACTATACCACCCCAACCATAAACCACCCTCACCAATCACCCACACCCTT
TTCCCCCACTTCCCACCTTTTTTCCCTCTCTATCCACCACCCCCACTTCC
ATATCACCCT

Query= MSMg01no525_k04.b1 MSMg01no525_k04.b1 CHROMAT_FILE:
MSMg01no525_k04.b1 PHD_FILE: MSMg01no525_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:19 2005
         (487 letters)



>mm_chr2_116971337_116972221
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 478/483 (98%), Gaps = 2/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcagatttcagaactctttagtggtatttacatggttacataatcctaacat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattcagtcagaattcagaactctttagtggtatttacatggttacataatcctaacat 626

                                                                       
Query: 65  ttcatccacagaaggcagtttgcaaacttcctcttaagagaccacactaatcagaaaata 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 ttcatccacagaaggcagtttgcaaacttcctcttaagagactacactaatcagaaaata 566

                                                                       
Query: 125 gaaactgcaagactgtggaatctttgaatgtttaaataccctttccgcctaaatgcaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaactgcaagactgtggaatctttgaatgtttaaataccctttccgcctaaatgcaata 506

                                                                       
Query: 185 taaatcgatttaattttcactgtcctacagcagtgctgtccaataaaaaacagagtcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatcgatttaattttcactgtcctacagcagtgctgtccaataaaaaacagagtcaaa 446

                                                                       
Query: 245 ctatgtaactaaagagggcagcactgaatatggtatgttacttcaagtataaacaccaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatgtaactaaagagggcagcactgaatatggtatgttacttcaagtataaacaccaac 386

                                                                       
Query: 305 agattgagtaaaatgtacccagaatcaattttgttagaatcacatgggtgcagtgatcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agattgagtaaaatgtacccagaatcaattttgttagaatcacatgggtgcagtgatcaa 326

                                                                       
Query: 365 gtaaactccaagtcaaggaaagagagagagagaaaaaagctatcatcatcaaggttatcc 424
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 325 gtaaactccaagtcaaggaaagagagagaga--aaaaagctatcatcatcaaggttatcc 268

                                                                       
Query: 425 tggtctgcattactaagttcaagtagcctatgtcaattttgatggctgctctgcaattac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 tggtctgcattactaagttcaagtagcctatgtcaattttgatggctgctctgtaattac 208

              
Query: 485 atg 487
           |||
Sbjct: 207 atg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 885
Length adjustment: 10
Effective length of query: 477
Effective length of database: 875
Effective search space:   417375
Effective search space used:   417375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)