Query= MSMg01no526_i16.b1 MSMg01no526_i16.b1 CHROMAT_FILE:
MSMg01no526_i16.b1 PHD_FILE: MSMg01no526_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:30 2005
(622 letters)
>mm_chr2_4492691_4493712
Length = 1022
Score = 890 bits (460), Expect = 0.0
Identities = 484/494 (97%), Gaps = 4/494 (0%)
Strand = Plus / Minus
Query: 1 agcacgggctatagagcatagtgggaagagtgtggtctttgggaaaggcagttaatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agcacgggctatagagcatagtgggaagagtgtggtctttgggaaaggcagttaatctca 488
Query: 61 ttgagccttattgttcctaaatataagccagggaagttaccacctactacagagtgatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgagccttattgttcctaaatataagccagggaagttaccacctactacagagtgatgc 428
Query: 121 actggagccaaggagacaagctgtgtgcacagcatcctctcccctccctctaattccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actggagccaaggagacaagctgtgtgcacagcatcctctcccctccctctaattccttc 368
Query: 181 cccttcctcccctttcttctctgctcgacagagcaacaaatgaaaaattgtgtcaggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cccttcctcccctttcttctctgctcgacagagcaacaaatgaaaaattgtgtcaggcca 308
Query: 241 gtaatcctagttacttgggggagctgaggcagggaaattataaatttacaatctgactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtaatcctagttacttgggggagctgaggcagggaaattataaatttacaatctgactgg 248
Query: 301 gccaatgaacaagttcaaagccagttcgggtgacttagtgagatacctgttctcaacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 247 gccaatgaacaagttcaaagccagttcgggtgacttagtgagatacctgttctaaacata 188
Query: 361 aaaagtagaatgaagaggtataggtcatggtagagtactttgttagtgtgtacaagatcc 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 187 aaaagtagaatgaagaggtataggtcatggtagagcactttgttagtgtgtacaagatcc 128
Query: 421 taggcttaacccctagcaacatgcacacacacacacacacacacacacacacacacacat 480
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 127 taggctcaacccctagcaacatg----cacacacacacacacacacacacacacacacac 72
Query: 481 gcacacgcatgcac 494
|||||||| ||||
Sbjct: 71 acacacgcacgcac 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_i16.g1 MSMg01no526_i16.g1 CHROMAT_FILE:
MSMg01no526_i16.g1 PHD_FILE: MSMg01no526_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:30 2005
(582 letters)
>mm_chr2_4382716_4383698
Length = 983
Score = 1077 bits (557), Expect = 0.0
Identities = 575/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 1 cctccgaggccag-aaaaaaaagggggcggatatgccatcatttctaccgctcttggaag 59
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccgaggccagaaaaaaaaaggaggcggatatgccatcatttctaccgctcttggaag 260
Query: 60 tgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccatcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccatcca 320
Query: 120 ctaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctggac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctggac 380
Query: 180 acagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggacaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggacaaca 440
Query: 240 tgcaccttgcagtaacgagacaagattgctcctggcaatcttggaatatacctataatgc 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaccttgcagtaaggagacaagattgctcctggcaatcttggaatatacctataatgc 500
Query: 300 tggcatttctggggagagccagagtctcctttcgaggggggggggttcttagtcttatta 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcatttctggggagagccagagtctcctttcgaggggggggggttcttagtcttatta 560
Query: 360 ataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttcatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttcatt 620
Query: 420 gaaatttgagagaaaaacaataggtcaggtttgctgaaaaatctcaggagctgccaggaa 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatttgagagaaaaacaacaggtcaggtttgctgaaaaatctcaggagctgccaggaa 680
Query: 480 tataagatggggttgggggtgggcatatcttttaagtcaagcatgaagatcagcgagagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataagatggggttgggggtgggcatatcttttaagtcaagcatgaagatcagcgagagg 740
Query: 540 gtgagaaagtccagtgtcagcgagagcatgtgcaggctgaa 580
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 gtgagaaagtccagtgtcagggagagcatgtgcaggctgaa 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
