Query= MSMg01no526_k12.b1 MSMg01no526_k12.b1 CHROMAT_FILE:
MSMg01no526_k12.b1 PHD_FILE: MSMg01no526_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:39 2005
(573 letters)
>mm_chr2_38602071_38603043
Length = 973
Score = 588 bits (304), Expect = e-172
Identities = 307/308 (99%)
Strand = Plus / Minus
Query: 1 gctggctcttctggttgcacaggctgcctgtcaatggttgattgttggctacacaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gctggctcttctggttgcacaggctgcctgtcaatggttgattgttggctacacaggagc 249
Query: 61 ttggtcatagtcctgcttcttgcttttgttgcctgggcttttgatgccttttattttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttggtcatagtcctgcttcttgcttttgttgcctgggcttttgatgccttttattttatt 189
Query: 121 ttactttattttattttatatatgagcactctgctgcatatacatcctcctgcctgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttactttattttattttatatatgagcactctgctgcatatacatcctcctgcctgaaat 129
Query: 181 gggcatcagatctccctatagatggttgtgagccaccatgtgattgctgagaattgatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 128 gggcatcagatctccctatagatggttgtgagccaccatgtgattgctgagaattgaact 69
Query: 241 caggatctctggaagagcagttagtgctgttaaccactgagccatctcagcagccccctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 caggatctctggaagagcagttagtgctgttaaccactgagccatctcagcagccccctg 9
Query: 301 ggctttta 308
||||||||
Sbjct: 8 ggctttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_k12.g1 MSMg01no526_k12.g1 CHROMAT_FILE:
MSMg01no526_k12.g1 PHD_FILE: MSMg01no526_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:39 2005
(515 letters)
>mm_chr2_38518320_38519235
Length = 916
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 1 acagctgttcagttttaatcacaatccatttgggaacattcttgccaccccaaaaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctgttcagttttaatcacaatccatttgggaacattcttgccaccccaaaaagaaa 260
Query: 61 cattatgcctagtgttcagagccaccagcccgataaaagtgaaactatcttaaagcttag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cattatgcctagtgttcagagccaccagcctgataaaagtgaaactatcttaaagcttag 320
Query: 121 agagaagaggtccatggacttgctatttggctgctgtttctttcctactctggcttttgg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaagaggtccatggacttgttatttggctgctgtttctttcctactctggcttttgg 380
Query: 181 tttccttctaatacaaataagc-tagttattttcccgtctgtctgttggcttcatgtatc 239
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tttccttctaatacaaataagcatagttattttcccatctgtctgttggcttcatgtatc 440
Query: 240 ccaggctaccctcaacactaagtagttgcagttcagaccttgaagctctgatcctctgcc 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggctaccctcaacattaagtagttgcagttcagaccttgaagctctgatcctctgcc 500
Query: 300 tccactccccaagtgctgtaaccccagcttgcctggtttatgccatgctggagatggggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccactccccaagtgctgtaaccccagcttgcctggtttatgccatgctggagatggggt 560
Query: 360 ccaggcctttgtgtctgctaggaaagcactctgaccactaagcttcaccctcagcatagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggcctttgtgtctgctaggaaagcactctgaccactaagcttcaccctcagcatagc 620
Query: 420 ttaatgaaacagttttgctatgtagtccaggctggccttgaactcactctgtagctctag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgaaacagttttgctatgtagtccaggctggccttgaactcactctgtagctctag 680
Query: 480 gctgaccccaaacttgtagcagccctcttgtctcag 515
||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgaccccaaacttgtagcagccctcttgtctcag 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
