BAC Information

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BAC

Clone NameMSMg01-527A19
Chromosome2 (Build37)
Map Location 86,105,052 - 86,105,568
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049
Downstream geneOlfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527A19.T7 (MSMg01no527_a19.b1)MSMg01-527A19.TJ (MSMg01no527_a19.g1)
ACCAG596494AG596495
length780782
length of high quality
(start - end)		602 (46 - 647)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no527_a19.b1 PHD_FILE: MSMg01no527_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:09 2005CHROMAT_FILE: MSMg01no527_a19.g1 PHD_FILE: MSMg01no527_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGACGAAACCAAATGGCTGAGAAACACCTGAAAAAAATGT
TCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGCTT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TCTATCTAAAAGATGTTTCAACTAGTAAGAAAGAAACATGCTCTACTATG
TTCATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCTCTCAACAGAGGAATGGATACAAAAATTGTGGTACATTTACACAATGG
AGTATTACTCAGCCATTAAAAAGAATGAATTTATAAAATTCCTAGGCAAA
TGGTTGGACATAGAGGGCATCATTCTGTGTGATGTAACCCAATCACAAAA
GAACTCAAATGATATGTTCTCACTGATAAGTGGATATTAACCCAGAAACT
TAGAATACGCAAGATATAAGTTACAATTTGCAAAATACATGAGAACTCAG
AAGAACTAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTGGGAA
CAAAACACCCATGGAAGGAGTTACAGAGAC

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGTTGGGAGTCAGTGCAGTG
AGTGCAATGCAATGCAGGATAGTTGGATTTGTGCAGTTAAGTGCATGTCA
GCAGAAGCAGTTAAAGCTGGAGAATAAGAAGAAGGAACCGGAAGATTAAA
ACAAACTGCCAGAGTTAGGTTAATGCCAAGCAGAGCAATTCAAAGAGAAG
TTGAGAGAAGACAGATTGAGTTAGTCAGCTTGGAGAGGAATTTTAGCCAA
AGCCCCTGAATTGAACCAGCCTGATGGAATTTAGAAAGAACTGGAAAGGG
TGAGCTTATTCATCAGTAAACTCTGAGATGACAGTTACTTCAGGTGATTA
AAATTACTCCTCAAGCTAAACAATTTCCAACTGCTTAAAACATGGTGCCC
AACTCCCCTTTTCATGCTAGCATTTTATGAGTCTTAGTTTTAGCAACCAG
GAGCATCCATGGACAGCAAGAGGCAACTTAACAGCAATCAGGCTTCTTTA
CAGCCACCTCTGGCCGACCCAGTGTTAAGACATATCATCTCTAGGCAACA
GTGTCGTCCCTGTGTCATATCCCTTTATGCACGCATCCTCCTCTCTCTCT
CCTCTCTCCCAGAGGCTGCCTCTGACCTCTGACCGCCCCCTGACCCCAAA
CATCCCATGTGAGATCAGCTGCATGAGGTGATTTGTTCGGGACCATGCTG
ACTACTTCTAGCATTGGTGCTATGTGAGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_a19.g1 MSMg01no527_a19.g1 CHROMAT_FILE:
MSMg01no527_a19.g1 PHD_FILE: MSMg01no527_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:10 2005
         (649 letters)



>mm_chr2_86104520_86105568
          Length = 1049

 Score =  837 bits (433), Expect = 0.0
 Identities = 496/517 (95%)
 Strand = Plus / Minus

                                                                        
Query: 133  ccagagttaggttaatgccaagcagagcaattcaaagagaagttgagagaagacagattg 192
            |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct: 1049 ccagagttaggttaatgccaagcagagcaattcagagagaagctgagagaagacacattg 990

                                                                        
Query: 193  agttagtcagcttggagaggaattttagccaaagcccctgaattgaaccagcctgatgga 252
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 989  agttagtcagcttggagaggaatattagccaaagcccctgaattgaaccagcctgatgga 930

                                                                        
Query: 253  atttagaaagaactggaaagggtgagcttattcatcagtaaactctgagatgacagttac 312
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 929  atttagaaagaactggaaagggtgagcttattcatcagtaaaccctgagatgacagttac 870

                                                                        
Query: 313  ttcaggtgattaaaattactcctcaagctaaacaatttccaactgcttaaaacatggtgc 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  ttcaggtgattaaaattactcctcaagctaaacaatttccaactgcttaaaacatggtgc 810

                                                                        
Query: 373  ccaactccccttttcatgctagcattttatgagtcttagttttagcaaccaggagcatcc 432
            |||||||||||||||||||||||||||||| | |||||||  ||| ||||||| | | ||
Sbjct: 809  ccaactccccttttcatgctagcattttatcaatcttagtgctagtaaccaggcgaaccc 750

                                                                        
Query: 433  atggacagcaagaggcaacttaacagcaatcaggcttctttacagccacctctggccgac 492
            |||||||||||| ||||| || |||||||||||||||||||||| | | |||||||||||
Sbjct: 749  atggacagcaaggggcaagttcacagcaatcaggcttctttacaacaagctctggccgac 690

                                                                        
Query: 493  ccagtgttaagacatatcatctctaggcaacagtgtcgtccctgtgtcatatccctttat 552
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  ccagggttaagacatatcatctctaggcaacagtgtcgtccctgtgtcatatccctttat 630

                                                                        
Query: 553  gcacgcatcctcctctctctctcctctctcccagaggctgcctctgacctctgaccgccc 612
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629  gcacgcatcctcctctctctctactctctcccagaggctgcctctgacctctgaccgccc 570

                                                 
Query: 613  cctgaccccaaacatcccatgtgagatcagctgcatg 649
            |||||||||||||||||||||||||||||||||||||
Sbjct: 569  cctgaccccaaacatcccatgtgagatcagctgcatg 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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