BAC Information

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BAC

Clone NameMSMg01-527D08
Chromosome2 (Build37)
Map Location 21,265,495 - 21,266,161
singlet/doubletsinglet
Overlap genenone
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneGpr158, LOC637235, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527D08.T7 (MSMg01no527_d08.b1)MSMg01-527D08.TJ (MSMg01no527_d08.g1)
ACCAG596616AG596617
length748751
length of high quality
(start - end)
663 (53 - 715)610 (83 - 692)
definitionCHROMAT_FILE: MSMg01no527_d08.b1 PHD_FILE: MSMg01no527_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:22 2005CHROMAT_FILE: MSMg01no527_d08.g1 PHD_FILE: MSMg01no527_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCAGGGCCTCTGTGATCTTGCTGTGTGCCCCATGCCA
GGAGCTTAGCTGTCCTCAGTGGGGACACAGCTTCTCATTTCCTCGGCCTT
CTGTTCACTGCCTGAGCATCAGATAGAGGACAATGTTGCTCCACTGGGAA
AGTGGGTCAGCCAGACGGTCCAGGAGGAGACACGTGGAGGCCCAGAAATA
GTGCTCTGGAGATAGACTACCCAAGTTTAGACACAGGCGAGAAAGGGAAG
GAGTTCTGCCCGAGAAAGCAAATTTAAGCTTTGGCCTGAAATGGACCAGT
GTTGGGGACTCAGCAAAGTCTTAGGCACATTGATGATGGTTGATAGCTAT
CATTAATGAAAAGATCTAGTTTAAAGAGAGTACAGAACCAAAACCTTTCA
TGATCTCAACACTTCCCTAGAGCCTTGGCAGAGCACCTGCCACAGGTGTA
TTGCTGGACTGCAAGACTGAGCTCCTTGCAAGAGGTGAAGACTCACACAG
CGCATGCAAATTATTTGTCAGGGGCGAAAGCATTTGGGGGAAACAAAAGG
AAAAGTTTGTTAAACTAGTTGCCAGAAATTTCTTCCCTCTTCAGTTCATG
ATCTGTGTTATTTATTTGTTTTAAATGAATACTTGTAAGTCTACCACCTG
GCACTAAAACTTATGGCATGTCGGATATTTTCATCCAGCTCACGGTCT
TTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGA
ATGTCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACTACCCTGAGATTCCACCTCACATTAGTCAGAATAG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGGGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAAAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTAAACACATGTAACTCAAGAAGAATGAAGACTGAAGTGTGGAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_d08.b1 MSMg01no527_d08.b1 CHROMAT_FILE:
MSMg01no527_d08.b1 PHD_FILE: MSMg01no527_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:22 2005
         (663 letters)



>mm_chr2_21265297_21266363
          Length = 1067

 Score = 1228 bits (635), Expect = 0.0
 Identities = 655/667 (98%), Gaps = 10/667 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagggcctctgtgatcttgctgtgtgccccatgccaggagcttagctgtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctgcagggcctctgtgatcttgctgtgtgccccatgccaggagcttagctgtcct 258

                                                                       
Query: 65  cagtggggacacagcttctcatttcctcggccttctgttcactgcctgagcatcagatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagtggggacacagcttctcatttcctcggccttctgttcactgcctgagcatcagatag 318

                                                                       
Query: 125 aggacaatgttgctccactgggaaagtgggtcagccagacggtccaggaggagacacgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggacaatgttgctccactgggaaagtgggtcagccagacggtccaggaggagacacgtg 378

                                                                       
Query: 185 gaggcccagaaatagtgctctggagatagactacccaagtttagacacaggcgagaaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaggcccagaaatagtgctctggagatagactacccaagtttagacacaggcgagaaagg 438

                                                                       
Query: 245 gaaggagttctgcccgagaaagcaaatttaagctttggcctgaaatggaccagtgttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaggagttctgcccgagaaagcaaatttaagctttggcctgaaatggaccagtgttggg 498

                                                                       
Query: 305 gactcagcaaagtcttaggcacattgatgatggttgatagctatcattaatgaaaagatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gactcagcaaagtcttaggcacattgatgatggttgatagctatcattaatgaaaagatc 558

                                                                       
Query: 365 tagtttaaagagagtacagaaccaaaacctttcatgatctcaacacttccctagagcctt 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagtttaaagagagcacagaaccaaaacctttcatgatctcaacacttccctagagcctt 618

                                                                       
Query: 425 ggcagagcacctgccacaggtgtattgctggactgcaagactgagctccttgcaagaggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggcagagcacctgccacaggtgtattgctggactgcaagactgagctccttgcaagaggt 678

                                                                       
Query: 485 gaagactcacaca------gcgcatgcaaattatttgtcaggggcgaaagcatttggggg 538
           |||||| ||||||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaagacacacacacacacagcgcatgcaaattatttgtcaggggcgaaagcatttggggg 738

                                                                       
Query: 539 aaacaaaaggaaaagtttgttaaactagttgccagaaatttcttccctcttcagttcatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaacaaaaggaaaagtttgttaaactagttgccagaaatttcttccctcttcagttcatg 798

                                                                       
Query: 599 atctgtgttatttattt----gttttaaatgaatacttgtaagtctaccacctggcacta 654
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atctgtgttatttatttatttgttttaaatgaatacttgtaagtctaccacctggcacta 858

                  
Query: 655 aaactta 661
           |||||||
Sbjct: 859 aaactta 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1067
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1057
Effective search space:   690221
Effective search space used:   690221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)