TTTTTGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGAGGAAGAATCTATCACAATAACTGCACTGGTCTTT
GTGTGATCAAGAAATGAAACTCTTCCATCATTCCCCTTGGTTACAGGAGG
AACATTAATGTAAAGGAAGGGATCTTTGGGCAACAATCTTTAGAATTGAT
CTCCATATACTATAATCCTACAATTTAATTTGAAACCAATCTGCGTCTTA
TTCACTCTACTCTGAGTACACTGGGCATCTCTGCCATTTTAAAGGCTGCT
ATTGAGATGGAGTTTATTAACCTTCCTCTCCCCAATACCCTTCTGCTCAC
AGAACTGATTGGCAGCTAGTTTTGTAGACTTCTTGACTAAATGCTGGATT
TGCCAGACTCTCTGGAAATCATTTATAATCACATGATTCTTTTCTGAGCA
ATGGAATATCATGGGAAGTGCCCCGTGGAAGCTTTAATGAGATTTCCTTA
ACAAACAGCAGCTGAACATGACAGAGACATGGCCAAGGGAACTGGGAGTT
TAAGGTCAGGCTAGATGACGAAGCAATACCTGTTCTAAAGAACCAAGGAC
TAGAGGTTTAGTTCAGTGAACAAGTACTTGTGTATCATGCACACACACAC
ACACACACACACACACACACACACACACACACACACACATTTGAAGACAT
CTGCCTTGATCATTCTTTTTCTTTGCCTTATATTAATCTTATGCTGGGTG
AAACATGGGG

ACACACCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCC
CATTTTTTAATGGGGTTGTTTGATTTTCTGGAGTCCACCTTCTTGAATTC
TTTATATATATTGGGTATATAAAGTCCCCTATCTGATTTAGGATAGATAA
AGATCCTTTCCCAATCTGTTGGGAGCCTTTTTGTCTTATTGANGCAGGGN
NTCNTTTTGGCCTTACAGAAGCNTNTTTGGGNNNNAANAANNNNNNTNTN
TTTGTAGGAGGGGGGCGCCCCCTTTGTTGTGGGGGTTTGTNTCGCCGCGG
TTTTTTTATAAAGGGGGAGGCAAAGAGAGGGCCTGTTCTGTTTAAAGGGG
GGGGGGGGGCGTCCCCTCCCCTTTCANGGAGGGAGGGGTGGGGGGTGTCT
CTCCCTCCCCCCCGGGGGGGTTTCCTCCCTCAATTTCATTTTTCTGTCTT
CTTTCGGGAGGTGTGGGGGGGGGGGGTTTTTTTTTTTTCCTTCCCCTCCC
AATAATGATTTTCTTTTTTGTTCCCCCCTCCTCGTGCTTCNTNNTATTTC
TAAGTAGTTATTAGTTGTCTCCTTTCTTTTCTTTTCCTNCCCNCCNACTT
CCGCGTGCGGGTGTTTTTTTTGAGGGGGGGGGGGGGAGGGAGGGGGTATG
GGTAGCACTATTTCCCCCCCCCGACTGGTTGTTTTGCTTTTTGTTGTTCC
TCNCCTCATNNCTTGGGGCTGTTTTGTCCCCTCTTCTCATATTAATATTT
TTGGCGACCCCCTTGTTTGTTATA

Query= MSMg01no527_f08.b1 MSMg01no527_f08.b1 CHROMAT_FILE:
MSMg01no527_f08.b1 PHD_FILE: MSMg01no527_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:32 2005
         (673 letters)



>mm_chr2_135867896_135868968
          Length = 1073

 Score = 1207 bits (624), Expect = 0.0
 Identities = 649/670 (96%), Gaps = 20/670 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggaggaagaatctatcacaataactgcactggtctttgtgtgatcaagaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggaggaagaatctatcacaataactgcactggtctttgtgtgatcaagaaat 263

                                                                       
Query: 64  gaaactcttccatcattccccttggttacaggaggaacattaatgtaaaggaagggatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaactcttccatcattccccttggttacaggaggaacattaatgtaaaggaagggatct 323

                                                                       
Query: 124 ttgggcaacaatctttagaattgatctccatatactataatcctacaatttaatttgaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgggcaacaatctttagaattgatctccatatactataatcctacaatttaatttgaaa 383

                                                                       
Query: 184 ccaatctgcgtcttattcactctactctgagtacactgggcatctctgccattttaaagg 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaatctgcatcttattcactctactctgagtacactgggcatctctgccattttaaagg 443

                                                                       
Query: 244 ctgctattgagatggagtttattaaccttcctctccccaatacccttctgctcacagaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctattgagatggagtttattaaccttcctctccccaatacccttctgctcacagaac 503

                                                                       
Query: 304 tgattggcagctagttttgtagacttcttgactaaatgctggatttgccagactctctgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgattggcagctagttttgtagacttcttgactaaatgctggatttgccagactctctgg 563

                                                                       
Query: 364 aaatcatttataatcacatgattcttttctgagcaatggaatatcatgggaagtgccccg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatcatttataatcacatgattcttttctgagcaatggaatatcatgggaagtgccccg 623

                                                                       
Query: 424 tggaagctttaatgagatttccttaacaaacagcagctgaacatgacagagacatggcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaagctttaatgagatttccttaacaaacagcagctgaacatgacagagacatggcca 683

                                                                       
Query: 484 agggaactgggagtttaaggtcaggctagatgacgaagcaatacctgttctaaagaacca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agggaactgggagtttaaggtcaggctagatgacgaagcaatacctgttctaaagaacca 743

                                                                       
Query: 544 aggactagaggtttagttcagtgaacaagtacttgtgtatcatgcacacacacacacaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggactagaggtttagttcagtgaacaagtacttgtgtatcatgcacacacacacacaca 803

                                                                       
Query: 604 cacacacacacacacacacacacacacacacacatttgaagacatctgccttgatcattc 663
           ||||||||||||||                    ||||||||||||||||||||||||||
Sbjct: 804 cacacacacacaca--------------------tttgaagacatctgccttgatcattc 843

                     
Query: 664 tttttctttg 673
           ||||||||||
Sbjct: 844 tttttctttg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)