Query= MSMg01no527_k01.b1 MSMg01no527_k01.b1 CHROMAT_FILE:
MSMg01no527_k01.b1 PHD_FILE: MSMg01no527_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:56 2005
(592 letters)
>mm_chr2_3289195_3290186
Length = 992
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%)
Strand = Plus / Plus
Query: 5 gaattctggcttctcattttaagccctgagatccaaacttcattttcagactcctccctt 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggcagctcattttaagccctgagatccaaacttcattttcagactcctccctt 264
Query: 65 tgttcaaatacatgattaataagatttacttgggaatggagcttgtttgtggaactgccc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggttcaaatacatgattaataagatttacttgggaatggagcttgtttgtggaactgccc 324
Query: 125 aacctctggatgctgaacacagaatataaagttgcttctaagctacacacatcttccaag 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aacctctggatgctgaacacagaacataaagttgcttctaagctacacacatcttccaag 384
Query: 185 taatagaggagacacaggaagagatgggggccagacagactgagtactcctcatcttcgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatagaggagacacaggaagagatgggggccagacagactgagtactcctcatcttcgg 444
Query: 245 gatcccacaagtatctcacttatcacagtttgttttggaggaacccaaactgcagtggga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatcccacaagtatctcacttatcacagtttgttttggaggaacccaaactgcagtggga 504
Query: 305 gctagagtcaacctaaaagacaaatacttcactcaaaggtagctatgatggtaatttctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctagagtcaacctaaaagacaaatacttcactcaaaggtagctatgatggtaatttctt 564
Query: 365 gtgttcttccagatgggaaagcagttctttgtaccagtgcatacccctttgtggagcagt 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 gtgttcttccagatgggaaagcagttctttgtatcagtgcatacccctttgtggagcagt 624
Query: 425 gcaaggatttgagacctatgtggttctcaacccactgcctccgttctcagaaaaatctta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaaggatttgagacctatgtggttctcaacccactgcctccgttctcagaaaaatctta 684
Query: 485 cgtttcttttgtaacacctgagtctctgtaccatctagaggatggtgaagccattcccac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgtttcttttgtaacacctgagtctctgtaccatctagaggatggtgaagccattcccac 744
Query: 545 aaaggaaacttgatctataacactgttctccaatgagatcttttctat 592
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaggaaacttgatctataacactgttctccaatgagatcttttctat 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_k01.g1 MSMg01no527_k01.g1 CHROMAT_FILE:
MSMg01no527_k01.g1 PHD_FILE: MSMg01no527_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:56 2005
(652 letters)
>mm_chr2_3385555_3386606
Length = 1052
Score = 1007 bits (521), Expect = 0.0
Identities = 532/537 (99%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 115 tgcaccatgtggggactagagatcaaactcaggttgtcaggcctggagttggtgtgcctt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 tgcaccatgtggggactagagatcaaactcaggttgtcaggcctggagttggtgtgcctt 993
Query: 175 tacctgctatggcatcttcctgccctgacttttttttttaatagatgttgtgttgtccag 234
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 992 tacctgctatggcatcttcctgccctgac---tttttttaatagatgttgtgttgtccag 936
Query: 235 actggaacttatgatctcaaataatccccacacctttatctctggagtagctgagactat 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 935 actggaacttatgatctcaaataatcctcacacctttatctctggagtagctgagactat 876
Query: 295 acatgtgaaccactaaacccaactgaggaagtatttgggattgttttgtgttgctgagaa 354
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 875 acatgtgaaccactaaacccaactgagggagtatttgggattgttttgtgttgctgagaa 816
Query: 355 tagaactcagggccttggatatgttgggcaagcattctactatgatgttaccctgcccca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tagaactcagggccttggatatgttgggcaagcattctactatgatgttaccctgcccca 756
Query: 415 gcagccagactttgttataaatggaaggttgaacctctatgtaggcagcaggggaatttg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gcagccagactttgttataaatggaaggttgaacctctatgtaggcagcaggggaatttg 696
Query: 475 caagcaaagcacaatagagcagtaagtggttctatggattttttgtttttataaaataaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 caagcaaagcacaatagagcagtaagtggttctatggattttttgtttttataaaataaa 636
Query: 535 ccttatgttttcatcatgaaggacagattggagaattaccagtttggaggcagggagaca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccttatgttttcatcatgaaggacagattggagaattaccagtttggaggcagggagaca 576
Query: 595 atctggaagattagtatgataatccagataagaactgagagccaaaagtaactaatc 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atctggaagattagtatgataatccagataagaactgagagccaaaagtaactaatc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
