Query= MSMg01no527_k02.b1 MSMg01no527_k02.b1 CHROMAT_FILE:
MSMg01no527_k02.b1 PHD_FILE: MSMg01no527_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:56 2005
(189 letters)
>mm_chr2_141303986_141304574
Length = 589
Score = 329 bits (170), Expect = 7e-95
Identities = 179/182 (98%)
Strand = Plus / Minus
Query: 4 ggaattctatatagaaaataggaaaagttataattaactttcctgtgcagccaagtctca 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaattctatagagaaaataggaaaagttataattaactttcctgtgcagccaagtctca 326
Query: 64 aaatgtggaatgaccacttatctgctggtctgcttgactatatgcccacatttttacagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatgtggaatgaccacttatctgctggtctgcttgactatatgcccacatttttacagc 266
Query: 124 atcagctttcctttgtaacgataggattttattccttagagatctaagaaaagcatgaag 183
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accagctttcctttgtaatgataggattttattccttagagatctaagaaaagcatgaag 206
Query: 184 ag 185
||
Sbjct: 205 ag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no527_k02.g1 MSMg01no527_k02.g1 CHROMAT_FILE:
MSMg01no527_k02.g1 PHD_FILE: MSMg01no527_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:56 2005
(645 letters)
>mm_chr2_141186067_141187108
Length = 1042
Score = 1193 bits (617), Expect = 0.0
Identities = 634/641 (98%), Gaps = 3/641 (0%)
Strand = Plus / Plus
Query: 5 tgttcaacacactccattttggcagaaaaggcagggagaaatgaatgtttgtactcagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgttcaacacactccattttggcagaaaaggcagggagaaatgaatgtttgtactcagct 264
Query: 65 cattgtgtcctgtcttccctttttactcagtcgaggttccagaccatgaaagggtggtac 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattttgtcctgtcttccctttttactcagtcgaggttccagaccatgaaagggtggtac 324
Query: 125 cttatctagggtaggtcttccttcctaaattagacctctggaaacaaccttacaaatata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttatctagggtaggtcttccttcctaaattagacctctggaaacaaccttacaaatata 384
Query: 185 ttcagtggtatgtctcctagctgattccaaacctactgatgtggatgacgaaaaagaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagtggtatgtctcctagctgattccaaacctactgatgtggatgacgaaaaagaaac 444
Query: 245 atctcagtgtgatgcttgtagaaaaggaaaatctggggatagaagatgaaggtgttgcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atctcagtgtgatgcttgtagaaaaggaaaatctggggatagaagatgaaggtgttgcta 504
Query: 305 ggctcccacagtcagttagaacgttaataacaatgtactgctttacttacaacatttcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ggctcccacagtcagttagaacgttaataacaatgtactgctttacttaca---tttcag 561
Query: 365 ttaattgatctattgaacatacatttattgataatcttctgtgtatcagcaaagattctc 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 562 ttaattgatctattgaacatacatttattgttaatcttctgtgtatcagcaaagactctc 621
Query: 425 tgcacttgccagagcagaatgagcagcgaaggccaagcccctcacttcacacaagctcaa 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 tgcacttgccagagcagaatgagcagggaaggccaagcccctcacttcacacaagctcaa 681
Query: 485 ctgtaagactatttgtagttgaacacagcaaaactttgaaataagttatggctcttgcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgtaagactatttgtagttgaacacagcaaaactttgaaataagttatggctcttgcct 741
Query: 545 cagcccttgttggacatttttgcattggaaattctaaaaagaaaaaagtatttatgttga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cagcccttgttggacatttttgcattggaaattctaaaaagaaaaaagtatttatgttga 801
Query: 605 ataattgagtattttcaatcctgggttggttgtatccttgg 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ataattgagtattttcaatcctgggttggttgtatccttgg 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1042
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1032
Effective search space: 655320
Effective search space used: 655320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
