Query= MSMg01no527_k24.b1 MSMg01no527_k24.b1 CHROMAT_FILE:
MSMg01no527_k24.b1 PHD_FILE: MSMg01no527_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:01 2005
(588 letters)
>mm_chr2_33880487_33881474
Length = 988
Score = 1036 bits (536), Expect = 0.0
Identities = 574/592 (96%), Gaps = 12/592 (2%)
Strand = Plus / Plus
Query: 5 gaattcctgattaattgtaatagttcctgcttgttctttcaaatttcctaggtaaataat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgattaattgtaatagttcctgcttgttctttcaaatttcctaggtaaataat 264
Query: 65 cacataatgtgattgccccctttactttcttttgatcttaccaaatacatacatacatac 124
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 265 cacataatgtgattgccccctttactttcttttgatcttatcatatacatacatacatac 324
Query: 125 atatacatatatatatatatggtaatagaatatatgttacatacatatatatgataatag 184
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 --atac--atacatatatatggtaatagaatatatgttacatacatatatatgataatag 380
Query: 185 aatatatgtatatatttctttctgcattagtcaaggcaagctttctgagacatgaggagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatatgtatatatttctttctgcattagtcaaggcaagctttctgagacatgaggagc 440
Query: 245 agtactgagcaaccagttttcccaggggaagcagccctgataaggggctctgggcaattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtactgagcaaccagttttcccaggggaagcagccctgataaggggctctgggcaattt 500
Query: 305 ctgtggtgtaaattctcccatcacagcaggccttcagttgctgatggaatgtcactagat 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ctgtggtgtaaattctcccatcacagcaggccttcagttgctgatgggatgtcactagat 560
Query: 365 gtggaatttataaagagacacatggcctcaatgtgaggtggtcttcagggaagaacacaa 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggaatttataaagagacacgtggcctcaatgtgaggtggtcttcagggaagaacacaa 620
Query: 425 aaacaaaataacaaaaagaaaagttggaaaacacatgtgtgcatgc------acacacac 478
||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 621 aaacaaaataacaaaaagaaaagttggaaaacacatgtgtgcacgcgcacacacacacac 680
Query: 479 acacacacacacacacacacacacag--gaccagttgcaatgagcattacctcttccaca 536
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 acacacacacacacacacacacacagaggaccagttgcaatgagcattacctcttccaca 740
Query: 537 gtagctctaagagcgcctgtgacacactccactctacttgttcaatggggaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtagctctaagagcgcctgtgacacactccactctacttgttcaatggggaa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_k24.g1 MSMg01no527_k24.g1 CHROMAT_FILE:
MSMg01no527_k24.g1 PHD_FILE: MSMg01no527_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:01 2005
(532 letters)
>mm_chr2_33910073_33911007
Length = 935
Score = 996 bits (515), Expect = 0.0
Identities = 529/535 (98%), Gaps = 3/535 (0%)
Strand = Plus / Minus
Query: 1 caggtagagactttgactcataagaacattatcttccaggatgaaatgagatgcacaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caggtagagactttgactcataagaacattatcttccaggatgaaatgagatgcacaggg 676
Query: 61 ggaaggcatagtgggacactcactctggaacaaggggagccaggctgaaaggacagagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaaggcatagtgggacactcactctggaacaaggggagccaggctgaaaggacagagcc 616
Query: 121 aacagggctcttgggagaaaccttagaatgctaaggctgatgttgtgaactccagaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aacagggctcttgggagaaaccttagaatgctaaggctgatgttgtgaactccagaagtt 556
Query: 181 tctgagggtggaa---ggggggtccttgtgatcagtgggagacactgaggcatcagggta 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctgagggtggaagggggggggtccttgtgatcagtgggagacactgaggcatcagggta 496
Query: 238 cagaggatggacatgcatgtaaatcccagaagttccagatatttgctgtgcaatctcaga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagaggatggacatgcatgtaaatcccagaagttccagatatttgctgtgcaatctcaga 436
Query: 298 aagtcccttaatctccagttaattatgtccgcatttctgatgtttaaaaactaaaaagac 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 aagtcccttaatctccagttaattatatccgcatttctgatgtttaaaaactaaaaagac 376
Query: 358 ttggcttgggagacactacctgagtatttgatgtttgttaggtgacagttgagagcgata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttggcttgggagacactacctgagtatttgatgtttgttaggtgacagttgagagcgata 316
Query: 418 gcaccttgggtttatgcagcacccactagagttgaaaggatacctcgtcctgtgagtcag 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 gcaccttgggtttatgcagcacccactagagttgaaaggatacctcatcctgtgagtcag 256
Query: 478 gctcagtgtgaggtggacgtagcgaggtctagttacgccaaggttaggcagtctc 532
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 gctcagtgtgaggtggacgtatcgaggtctagttacgccaaggttaggcagtctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 935
Length adjustment: 10
Effective length of query: 522
Effective length of database: 925
Effective search space: 482850
Effective search space used: 482850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
