BAC Information

Click to search

BAC

Clone NameMSMg01-527N04
Chromosome2 (Build37)
Map Location 57,980,066 - 58,147,580
singlet/doubletdoublet
Overlap genePscdbp, LOC100042926, Acvr1c
Upstream geneLOC100041900, LOC100042910, Gpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026
Downstream geneLOC667062, Acvr1, LOC674940, Upp2, BC062650, Pkp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N04.T7 (MSMg01no527_n04.b1)MSMg01-527N04.TJ (MSMg01no527_n04.g1)
ACCAG597085AG597086
length741738
length of high quality
(start - end)		688 (54 - 741)648 (84 - 731)
definitionCHROMAT_FILE: MSMg01no527_n04.b1 PHD_FILE: MSMg01no527_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:13 2005CHROMAT_FILE: MSMg01no527_n04.g1 PHD_FILE: MSMg01no527_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,980,066 - 57,980,749)(58,146,933 - 58,147,580)
sequence
TTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACTCTACGAGTTCAGAGGAGAATTGGAACCTGAAC
AGCAACTTATTTGTATGGTTTTGAGACACTAAGCAGACCCACACTTGTGC
CTGGTCATGTGATCCTGCTCATTCTCCACATTTGCCATAATTTATTGAGT
CATGGTCAAAAATTAATGACTGTAAGGCCTCAAAAAAGTAGGTAACATTT
GGTTTGATTTAGTTATTTGCAGAAGTAAGATTGAACATAGAACCTTGTGC
ATATTAGGCAACAACCCTCCCCCCTGATTTATATCCCTAGCACCATGGTA
TCACACATGTCTCAAGCAGTCATGCAGATTTTTAAATCTGCCTTTAAAAG
AAACTTTTCCTTCATGGGACCAAGAGCATCTTCTCCCATTGATGTCAGAC
AAGGCTACCCTTTCTTATGTATACAGTTGGAGCCATGGGTCTTTCCATGT
GTACTCCTTGGTTGGTGGTTTAGACCCTAGGAGTCTTGGGGGTTCTGGTT
GGTTGATATTGTTGTTCTTCCTATGGTGTTGCAAAACCATTCAGTTCCTT
CAGTCCTTTCTCTAACTTGTCTATTGGGGACCCCATGCTCAGTCTAATGG
TTGGCTGCGAGCATCTACCTCTGTATATGTCAGGCTCTGGCAGTGTCTCT
CAGGAGACAGCTATATCAGGCTCCTGTCAGCATGCACTTCT

AAAAAGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAGATTCCTGCTG
CTGTCTCAAAACTCTTGGGACATATTAATTGTTTTTTGTTTGTTTGTTTG
TTTTGTTTTTATACCGTGGGGTTTAGTTCCTTGTTTATTTGTTGTAGCTT
TCCCTTTTCCCCTCACCTCTTCCCCTTTTTGTCAGAGCCATCACTGCCAC
ACTCTTGGACTGTTTAATGAAATCAGGGCAGTTAGGGTGTTCGGTTTAAG
TCCTTGAAGTGTGGGGAAATTAGTTAATAAATCAGTTTTCCTGTGGACAT
TTGTTTGTGACCCTAGGAGGGCTTGTAGACCTGTAGGTGTCCCATGGGGA
TATGCTTTCTGAAGCTAGCAGGAGCTGCCCTGGAATTAAATCAACATTAA
GTTCTAGAAGCCCATAAATAGGAGCCTGACAGAAGCTTGTGGCATCCCTA
GCTGGTTCTGAAGCTCAAGGCTATTCATCCACCATTATGTTTTCTTCTTT
AATGGATTCAGACCTCTGATGAAGAAATTCTGAGATCCAGACTGCATCAT
GGAGTAAAAGAGTCTTTCTTAATACGACAAAACACCAGGGAGTATAGGAA
CAGAGCAGGATTTCCCTGAAGTTATAGGGATTCCTCTCTTCCCATCTGAA
TTTCTTGAAATCCCTAGCCCTGGCTTTGCAGAAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n04.b1 MSMg01no527_n04.b1 CHROMAT_FILE:
MSMg01no527_n04.b1 PHD_FILE: MSMg01no527_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:13 2005
         (688 letters)



>mm_chr2_57979862_57980949
          Length = 1088

 Score = 1307 bits (676), Expect = 0.0
 Identities = 682/684 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcactctacgagttcagaggagaattggaacctgaacagcaacttatttgtatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactctacgagttcagaggagaattggaacctgaacagcaacttatttgtatg 264

                                                                       
Query: 65  gttttgagacactaagcagacccacacttgtgcctggtcatgtgatcctgctcattctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttttgagacactaagcagacccacacttgtgcctggtcatgtgatcctgctcattctcc 324

                                                                       
Query: 125 acatttgccataatttattgagtcatggtcaaaaattaatgactgtaaggcctcaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatttgccataatttattgagtcatggtcaaaaattaatgactgtaaggcctcaaaaaa 384

                                                                       
Query: 185 gtaggtaacatttggtttgatttagttatttgcagaagtaagattgaacatagaaccttg 244
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gtaggtaacatttggttggatttagttagttgcagaagtaagattgaacatagaaccttg 444

                                                                       
Query: 245 tgcatattaggcaacaaccctcccccctgatttatatccctagcaccatggtatcacaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcatattaggcaacaaccctcccccctgatttatatccctagcaccatggtatcacaca 504

                                                                       
Query: 305 tgtctcaagcagtcatgcagatttttaaatctgcctttaaaagaaacttttccttcatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtctcaagcagtcatgcagatttttaaatctgcctttaaaagaaacttttccttcatgg 564

                                                                       
Query: 365 gaccaagagcatcttctcccattgatgtcagacaaggctaccctttcttatgtatacagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaccaagagcatcttctcccattgatgtcagacaaggctaccctttcttatgtatacagt 624

                                                                       
Query: 425 tggagccatgggtctttccatgtgtactccttggttggtggtttagaccctaggagtctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggagccatgggtctttccatgtgtactccttggttggtggtttagaccctaggagtctt 684

                                                                       
Query: 485 gggggttctggttggttgatattgttgttcttcctatggtgttgcaaaaccattcagttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggggttctggttggttgatattgttgttcttcctatggtgttgcaaaaccattcagttc 744

                                                                       
Query: 545 cttcagtcctttctctaacttgtctattggggaccccatgctcagtctaatggttggctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttcagtcctttctctaacttgtctattggggaccccatgctcagtctaatggttggctg 804

                                                                       
Query: 605 cgagcatctacctctgtatatgtcaggctctggcagtgtctctcaggagacagctatatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cgagcatctacctctgtatatgtcaggctctggcagtgtctctcaggagacagctatatc 864

                                   
Query: 665 aggctcctgtcagcatgcacttct 688
           ||||||||||||||||||||||||
Sbjct: 865 aggctcctgtcagcatgcacttct 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_n04.g1 MSMg01no527_n04.g1 CHROMAT_FILE:
MSMg01no527_n04.g1 PHD_FILE: MSMg01no527_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:14 2005
         (648 letters)



>mm_chr2_58146663_58147710
          Length = 1048

 Score = 1191 bits (616), Expect = 0.0
 Identities = 640/648 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtagattcctgctgctgtctcaaaactcttgggacatattaattgttttttgtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tcagtagattcctgctgctgtctcaaaactcttgggacatattaattgttttttgtttgt 859

                                                                       
Query: 61  ttgtttgttttgtttttataccgtggggtttagttccttgtttatttgttgtagctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ttgtttgttttgtttttataccgtggggtttagttccttgtttatttgttgtagctttcc 799

                                                                       
Query: 121 cttttcccctcacctcttcccctttttgtcagagccatcactgccacactcttggactgt 180
            |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 798 tttttccccccacctcttcccccttttgccagagccatcactgccacactcttggactgt 739

                                                                       
Query: 181 ttaatgaaatcagggcagttagggtgttcggtttaagtccttgaagtgtggggaaattag 240
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 738 ttaatgaaatcagggcagttggggtgttcggtttaagtcctttaagtgtggggaaattag 679

                                                                       
Query: 241 ttaataaatcagttttcctgtggacatttgtttgtgaccctaggagggcttgtagacctg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttaataaatcagtttttctgtggacatttgtttgtgaccctaggagggcttgtagacctg 619

                                                                       
Query: 301 taggtgtcccatggggatatgctttctgaagctagcaggagctgccctggaattaaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taggtgtcccatggggatatgctttctgaagctagcaggagctgccctggaattaaatca 559

                                                                       
Query: 361 acattaagttctagaagcccataaataggagcctgacagaagcttgtggcatccctagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acattaagttctagaagcccataaataggagcctgacagaagcttgtggcatccctagct 499

                                                                       
Query: 421 ggttctgaagctcaaggctattcatccaccattatgttttcttctttaatggattcagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggttctgaagctcaaggctattcatccaccattatgttttcttctttaatggattcagac 439

                                                                       
Query: 481 ctctgatgaagaaattctgagatccagactgcatcatggagtaaaagagtctttcttaat 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctctgatgaagaaattctgatatccagactgcatcatggagtaaaagagtctttcttaat 379

                                                                       
Query: 541 acgacaaaacaccagggagtataggaacagagcaggatttccctgaagttatagggattc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acgacaaaacaccagggagtataggaacagagcaggatttccctgaagttatagggattc 319

                                                           
Query: 601 ctctcttcccatctgaatttcttgaaatccctagccctggctttgcag 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctctcttcccatctgaatttcttgaaatccctagccctggctttgcag 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |