TGGTTATAGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAAAAG
AGGATCCGCGGAATTCTTTATTCCGATAGCTAGAAAACAGCAGGTTTCAG
AAGCCAGTGTGGTTAACACAGTCACTCGCACACACATGCATGTCAAATCA
AAGTCTGTCTTTTCTCCTAGTCTTTTTTTCCCTCTGTTTTGTTTGTTTCT
GTTTGTTGAGTCAGGATCTCAGTATAGACCAGGCTGGCTTACCTCAGTGT
AGACCAGGCTGGCTTATCTCAGTGTAGACCAGGTTGACTTACCTCAGTGT
AGACCAGGTTGGCTTACCTCAGTGTATACCAGGCTGGCTTACCCTTTCTA
TGAAGACCACCTTGGACCTTTAAACTTGCAGAGCTCCTCCTCCCTCTGCC
TCCCAAGCAACAAAAATCTTTTGTCTTAGTTTTGTGGGCTCAGTGAGCCT
GACAGTAGTGTAGACTTTAGGGACAGTTTAGCTCCTGGGATAGCCTGCTC
ACAGAAATGAACTCATCAGCACTACAGACAACCCTTGTGGAAAGAGGCGC
CTATGCACCTTATCAGTACCATTTAGCCATTTCCTGGGAAGCTGCAGCTT
TGGGGGATTAACCATCTGATTAGATGTGGGATAACTGAGTGAGGTCATTT
CTTTTTATATTAAGGGTGAACCTTTTTTTATATAATTTATCTATTACCAA
TTATACAAGTACACAGTATCTGTTT

TTTATTATTTAATCAGACTTTCTTTCTTTTNTTTCTGTTCTTTTTACTAT
GCAGTGGGTAGCCTGGNGGCCGCCGTTCAAAAGAATTTAGGNGNACACTA
TAGTTTTTTCCCCACAAGGAATTCAGATGCGCCGCACTCTTCTCCCAGCC
TCTGCAGCTTCCTGGTTTGGCTCGGCTCTCCACGACTCTGTTAACTGAAC
CAAAAGATGTGACTCGTTGGGCCAAATCCCCAGTGCTTCGGCTTCCTCCC
TTCCTGAATTCTTCCAAACACGGAAGGGTGCCTCTTTTTACCTTCGGTTT
TACTGGAATGCTGGAGAAAACCTGCCATTGGCCCCTATAAAGGGGATTTT
TTTTTGGGAATTATCCCCAAATTCCACCCCTTATTTCCAATTGTGTTTCT
TTACCCTGGACTCAAAGGGGAAACAGGCGTTTTTTTCTTTTAAATTTAAA
AACCCTCCTTCTGTGGGTTCCCCTCATTCTTGGGGGTTCTTCACCCCCTA
TTTTTCGTACGAATTTTTCTAAAATACTTTTTTCCCTCCTTTTATTTTTT
TG

Query= MSMg01no527_o03.b1 MSMg01no527_o03.b1 CHROMAT_FILE:
MSMg01no527_o03.b1 PHD_FILE: MSMg01no527_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:18 2005
         (541 letters)



>mm_chr2_166743800_166744740
          Length = 941

 Score =  791 bits (409), Expect = 0.0
 Identities = 510/593 (86%), Gaps = 75/593 (12%)
 Strand = Plus / Plus

                                                                       
Query: 24  gatagctagaaaacagcaggtttcagaagccagtgtggttaacacagtcactcgcacaca 83
           ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 149 gatagatagaaaacagcaggtttcagaagccagtgtggttaatacagccactcgcacaca 208

                                                                       
Query: 84  catgcatgtcaaatcaaagtctgtcttttctcctagtctttttttccctctgttttgttt 143
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tatgcatgtcaaatcaaagtctgtcttttctcctagtctttttttccctctgttttgttt 268

                                                                       
Query: 144 gtttctgtttgttgagtcaggatctcagtatagaccaggc-------------------- 183
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 269 gtttctgtttgttgagtcaggatctcagtatagaccaggctggcttatctcagtgtagac 328

                                                                       
Query: 184 -------------------------------------------------------tggct 188
                                                                  |||||
Sbjct: 329 caggttgacttacctcagtgtagaccaggttggcttacctcagtgtagaccaggttggct 388

                                                                       
Query: 189 tacctcagtgtagaccaggctggcttatctcagtgtagaccaggttgacttacctcagtg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tacctcagtgtagaccaggctggcttatctcagtgtagaccaggttgacttacctcagtg 448

                                                                       
Query: 249 tagaccaggttggcttacctcagtgtataccaggctggcttaccctttctatgaagacca 308
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 tagaccaggttggcttacctcagtgtagaccaggctggcttaccctttctatgaagacca 508

                                                                       
Query: 309 ccttggacctttaaacttgcagagctcctcctccctctgcctcccaagcaacaaaaatct 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccttggacctttaaacttgcagagctcctcctccctctgcctcccaagcaacaaaaatct 568

                                                                       
Query: 369 tttgtcttagttttgtgggctcagtgagcctgacagtagtgtagactttagggacagttt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttgtcttagttttgtgggctcagtgagcctgacagtagtgtagactttagggacagttt 628

                                                                       
Query: 429 agctcctgggatagcctgctcacagaaatgaactcatcagcactacagacaacccttgtg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agctcctgggatagcctgctcacagaaatgaactcatcagcactacagacaacccttgtg 688

                                                                
Query: 489 gaaagaggcgcctatgcaccttatcagtaccatttagccatttcctgggaagc 541
           ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 689 gaaggaggcacctatgcaccttatcagtaccatttagacatttcctgggaagc 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)