Query= MSMg01no528_c09.b1 MSMg01no528_c09.b1 CHROMAT_FILE:
MSMg01no528_c09.b1 PHD_FILE: MSMg01no528_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:40 2005
(692 letters)
>mm_chr2_114260703_114261794
Length = 1092
Score = 1278 bits (661), Expect = 0.0
Identities = 682/689 (98%)
Strand = Plus / Plus
Query: 4 ggaattccattatcaacatcaaaatattccaacctcacatacaatcagtgactttcatct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattccattatcaacatcaaaatattccaacctcacatacaatcagtgactatcatct 263
Query: 64 taatagaaagatgtagtcagcttttattcattaggaagtggcacatacacacatatacac 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 taatagaaagatgtagtcggcttttattcattaggaagtggcacatacacacatacacac 323
Query: 124 acaactaccaacacactggaagactgtctttgacattcttcgtgtgtgatatatattcta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaactaccaacacactggaagactgtctttgacattcttcgtgtgtgatatatattcta 383
Query: 184 cagtaatataacctaataataggtagagatagctccatagattagttacattagttattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtaatataacctaataataggtagagatagctccatagattagttacattagttattt 443
Query: 244 ctctagcttatatggaactataagtgaaattataagggtctgtgttttgcaaagaatgat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctagcttatatggaactataagtgaaattataagggtctgtgttttgcaaagaatgat 503
Query: 304 attactgatgtgatgaaacatcatgacctgactggctgcccgtaaagggtggtttttcct 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 attactgatgtgatgaaacatcatgacctgactggctgcccgtaaaaggtggtttttcct 563
Query: 364 agaaatgactgatctagttctgggaaacagaacttaatctcccaaacttccagttcgcag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 agaaatgactgatctagttctgggaaacagaacttaatctcccaaacttccagtttgcag 623
Query: 424 cctgtcatggagtcagcctggctctggctaactctgccctctgaagataaacccttttct 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtgtcatggagtcagcctggctctggctaactctgccctctgaagataaacccttttct 683
Query: 484 gccaaagttgctttggtcatggtgtttaatcacagcaatggtaactaactatacctaaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccaaagttgctttggtcatggtgtttaatcacagcaatggtaactaactatacctaaga 743
Query: 544 caataggaataaaaatgtgggcagaaagctaatgaagaggaaaagagaatttgtgttcaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caataggaataaaaatgtgggcagaaagctaatgaagaggaaaagagaatttgtgttcaa 803
Query: 604 aatgattaccttataagtacattacattacaagatgtgctatatatatggaatacaaata 663
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 804 aatgattaccttataagtacattacattacaagatgtgctatatatatggaacacaaata 863
Query: 664 attctatatcagctgatgaagccctatta 692
|||||||||||||||||||||||||||||
Sbjct: 864 attctatatcagctgatgaagccctatta 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_c09.g1 MSMg01no528_c09.g1 CHROMAT_FILE:
MSMg01no528_c09.g1 PHD_FILE: MSMg01no528_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:40 2005
(586 letters)
>mm_chr2_114434412_114435397
Length = 986
Score = 1029 bits (532), Expect = 0.0
Identities = 562/586 (95%), Gaps = 22/586 (3%)
Strand = Plus / Minus
Query: 1 ttttgaactctgaatgttaggccacagtttgtgcaaagacagagtgcaggcaagatggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttttgaactctgaatgttaggccacagtttgtgcaaagacagagtgcaggcaagatggtg 706
Query: 61 acattctgttcgtattatcatcaagaggctgaggcaggaggatacagtgtgtgaggctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acattctgttcgtattatcatcaagaggctgaggcaggaggatacagtgtgtgaggctag 646
Query: 121 cctgagacatggacacacacacacacacacacacacacacacacacacacacacacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cctgagacatggacacacacacacacacacacacacacacacacacacac---------- 596
Query: 181 acacacacagagagagagagagaagcttaatataaaatagggctctctacatgtgggctt 240
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 595 ------------agagagagagaagcttaatataaaatagggctctctacacgtgggctt 548
Query: 241 tgctttgttttgttgtagtttaactgaacgttctgtcgtctgtagcatacactacacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgctttgttttgttgtagtttaactgaacgttctgtcgtctgtagcatacactacacact 488
Query: 301 gcttcaataccactcagccttctgctgttttgcatcctcttcacaccttattttgaacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcttcaataccactcagccttctgctgttttgcatcctcttcacaccttattttgaacct 428
Query: 361 ttgaacaaactatttgaggacttttggttttgtgagttttgttttgttttgttttgtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgaacaaactatttgaggacttttggttttgtgagttttgttttgttttgttttgtttt 368
Query: 421 gcttgtttatttgtcgtttttttctcagtagaataaagaagaaatacttgcaaaggaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcttgtttatttgtcgtttttttctcagtagaataaagaagaaatacttgcaaaggaaac 308
Query: 481 aaacatttatagtattgcagaatacacatttcctttctaggtcatatcttctgctgttcg 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 aaacatttatagtattgcagaatacacatttgctttctaggtcatatcttctgctgttcg 248
Query: 541 tatctgcttttgcagtttacctttaggactctgccacaaaactgag 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatctgcttttgcagtttacctttaggactctgccacaaaactgag 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
