Query= MSMg01no528_j08.b1 MSMg01no528_j08.b1 CHROMAT_FILE:
MSMg01no528_j08.b1 PHD_FILE: MSMg01no528_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:13 2005
(689 letters)
>mm_chr2_9335024_9336112
Length = 1089
Score = 824 bits (426), Expect = 0.0
Identities = 465/478 (97%)
Strand = Plus / Minus
Query: 5 gaattctgttgcaaaggtaagtgtcttgagcatactaggtctttacaatctctgttgcag 64
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 478 gaattctgttgcaaaggtaagtgtcctgagcacactaggtctttacaatctctgttgcag 419
Query: 65 cttctgccacaggctgaacttgtactgaagtgacattcaggaggtagttgatgaagtgga 124
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 418 cttctgtcaccggctgaacttgtactgaagtgagattcaggaggtagttgatgaagtgga 359
Query: 125 gatattttttttttccctaggaggaaaagccacatctcccatggcttgtgccaaggcaag 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatattttttttttccctaggaagaaaagccacatctcccatggcttgtgccaaggcaag 299
Query: 185 ggcctttatgtgattagaaccatttatctcaattgtgctaaagtcacacagaccttgagc 244
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 tgcctttatgtgactagaaccatttatctcaattgtgctaaagtcagacagaccttgagc 239
Query: 245 atggaacatgataaacgcttgctctaaagccagctgtgatagctcatctttatagtcaac 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 238 atggaacatgataaacgcttgctctaaagccagctgtgatagctcatctttacagtcaac 179
Query: 305 ttagctgcatctagagtcacacagcagacaaattctgcctatgcctatgaaggtgtttcc 364
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct: 178 ttagctgcatctagagtcacccagcagacaaattctgcctatgcctatgaaggtatttac 119
Query: 365 agagaggcctaactgaagacagaaggcccattgtgagtggtgtcattccataagctggag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 agagaggcctaactgaagacagaaggcccattgtgagtggtgtcattccataagctggag 59
Query: 425 tcccaaactgaataagaggaagaaagggaggaagccaactgagtaccagtattcatct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tcccaaactgaataagaggaagaaagggaggaagccaactgagtaccagtattcatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_j08.g1 MSMg01no528_j08.g1 CHROMAT_FILE:
MSMg01no528_j08.g1 PHD_FILE: MSMg01no528_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:13 2005
(621 letters)
>mm_chr2_9204051_9205071
Length = 1021
Score = 1108 bits (573), Expect = 0.0
Identities = 609/621 (98%)
Strand = Plus / Plus
Query: 1 tctgctgtgcactggcaatactaccctttgtcttcatatttcgcttctgtttgtcttact 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tctgctgtgcactggcaatactaccctttgtcttcatatttcacttctgtttgtcttact 260
Query: 61 tttaaaaaggtactagagctgaaggagtttgcagaggatggtcttgtcggacatcaatgg 120
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaaaggtactagagctgaaggggtttgcagaggatggtcttgtcggacatcaatgg 320
Query: 121 aaggagaggccccttggtcctgtggatacttgatgccccaacataggggaatgctagggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagaggccccttggtcctgtggatacttgatgccccaacataggggaatgctagggt 380
Query: 181 ggtgaggcaggagtgagttggtgggtgggggagcaccttgtagaagcagggggaggggtg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ggtgaggcaggagtgagttggtgggtgggggagcatcttgtagaagcagggggaggggtg 440
Query: 241 gggtgagaggtttctggaggggaaaccaggaaaggtgataacatttgaaatgtaaataaa 300
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 441 gggtgagaggtttctggaggggaaaccaggaaaggagataatatttgaaatgtaaataaa 500
Query: 301 taaaataaccaataaaacaattttttaaaaagttaataataatggtatgtcacgagggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaataaccaataaaacaattttttaaaaagttaataataatggtatgtcacgagggtc 560
Query: 361 cttttacccatccagtgtttctttggtgcttatacccacttgaggccccctttccagctc 420
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 561 cttttacccatcctgtgtttctttggtgcttatacccacttcaggccccctgtccagctc 620
Query: 421 ttttgagtagggtgggccacaagcaagtgtcatttctaccatgtaggtcagagatgggaa 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttgagtagggtgagccacaagcaagtgtcatttctaccatgtaggtcagagatgggaa 680
Query: 481 ggggtgggtaaatccactaaaacagattttgcttcagacatgtcataatgatacctcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggtgggtaaatccactaaaacagattttgcttcagacatgtcataatgatacctcata 740
Query: 541 ccttgtatgctaatttgaaaaaaaacggaaaatgtcttttatgaatcttcatgctagtat 600
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 741 ccttgtatgctaatttgaaaaaaacctgaaaatgtcttttatgaatcttcatgctagtat 800
Query: 601 tagcttgaaaatactttattc 621
|||||||||||||||||||||
Sbjct: 801 tagcttgaaaatactttattc 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
