BAC Information

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BAC

Clone NameMSMg01-528K01
Chromosome2 (Build37)
Map Location 130,374,260 - 130,507,112
singlet/doubletdoublet
Overlap genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa
Upstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Downstream geneSlc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528K01.T7 (MSMg01no528_k01.b1)MSMg01-528K01.TJ (MSMg01no528_k01.g1)
ACCAG597699AG597700
length745749
length of high quality
(start - end)
650 (50 - 699)397 (79 - 475)
definitionCHROMAT_FILE: MSMg01no528_k01.b1 PHD_FILE: MSMg01no528_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:17 2005CHROMAT_FILE: MSMg01no528_k01.g1 PHD_FILE: MSMg01no528_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:17 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(130,506,465 - 130,507,112)(130,374,260 - 130,374,655)
sequence
CCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATGTAAACCAGGCTGGCCCTGAGCTCACAAAGATCTGT
TTGCCTCTGCCTCCCAAATTCTGGGATTAAAAGTGTGCACTACCATGCCT
GGTCAAAGGAAACTCTTGAATCCAAGGGGCAAGAGTTTAGTATCAACTGG
CCCAGAGTTCCCCTATGCAGAGCCAACTGCTCTTCCAAGAACTGGCTCCT
GATGCTGCCTGGATCTCCTGGCAGAAGGGAACCCAGAGAAAGCCTCACAG
GAGTGCCTGCCTCCTGGGGAGTTCTGCACTAGTCCCTACCCATGGTGCTA
GTGGTCACCAGCCCCAGCAGCCACACTAAAGTACTCCTGTAGCTTGTGCA
GGGCCCGGAACCGATGAGAAATGGTGTTCTTCTCAGACTTTGGCATCTCT
GCATACCTAACAGGAAAGAGAAGCAGCTCAGAAAACAGGGAACCCAGGTA
CTGGGGGACAGGCACCCAACTGTCTCCCTGGAGCACAAACCTTTTTTTTT
AATCCAAATTTTTTTTTCATTTATCCTTCTGTCATATATTACATCCCAAG
TTTTCCCTCCCTCCTCTCCTCCCAGTCCCTCATCTACCCACAAATCCACT
CTTCCTTCAGGCCTCCCAGGGATATTACCCAAACATGGTATATCATGTTT
CAGTAAGATGAGGCATATCCCCTTATACTAAAGTTGGTCGAGGCA
NCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTGAGCGTAACCCCAGAC
ATCAGTGTCACAACTGTAAGGATCTATATAGTGTCTCTTCATACATTTCA
TTAAATCCCAGTTCTGTCACATGGCCGAATGTATTTCATGCCTCACACAC
CTTACACTCCTCCCTGCGCTAGCTTTTTCACCTTCAAACTCATCATATAG
CATTAGTCTACAGCCCGGGTTCAGTCGGGACCAAATAAAACTACCTTAAC
CCACTGTTCCCATCAGCCAGCCAAAAGGGCTACATCCTCCTTCCCCAGCC
CAGCTTGGAGGGCCGTCTTTATCTTCTGCCTCCTCCCCTGTGAGTAACTG
ATTTTATGACCTAAAGCTGCTAGGTGTGATCTTAAGTACCTATTTATTAG
TTTGATGGGTGGGTNGGGTGGGGGTTNTTNNTTNTTTTTNTTNTTTTTTT
TTTTNTTTNNTTTTTNTTTTTNTTTTTTTTTTTTNTTTTTTTTCTTTTTT
TTTTTTTTTTTTTTTTGTGTGTTTTGTTTTTTTTTTGTTTTGCGCCTGCT
TTTTTGTGTTTTTCTGTTTTCTCTGTTTCTTTTTGGCTCTTGTCCTTTTC
TTCATTCTCAGCAAGACATGTATTATTTTCTATCTAAATTAACCCACTAT
TTTTTCTTATTTGTATTCCATTATCAACACTTTATTACTTTTTTAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_k01.b1 MSMg01no528_k01.b1 CHROMAT_FILE:
MSMg01no528_k01.b1 PHD_FILE: MSMg01no528_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:17 2005
         (650 letters)



>mm_chr2_130506162_130507212
          Length = 1051

 Score = 1129 bits (584), Expect = 0.0
 Identities = 632/650 (97%), Gaps = 5/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtaaaccaggctggccctgagctcacaaagatctgtttgcctctgcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 ggaattcactatgtaaaccaggctggccctgagctcacaaagatctgtttgcctctgcct 892

                                                                       
Query: 64  cccaaattctgggattaaaagtgtgcactaccatgcctggtcaaaggaaactcttgaatc 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 891 cccaaattctgggattaaaagtgtgcgctaccatgcctggtcaaaggaaactcttgaatc 832

                                                                       
Query: 124 caaggggcaagagtttagtatcaactggcccagagttcccctatgcagagccaactgctc 183
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 831 caagggacaagagtttagtatcaactggctcagagttcccctatgcagagccaactgctc 772

                                                                       
Query: 184 ttccaagaactggctcctgatgctgcctggatctcctggcagaagggaacccagagaaag 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 771 ttccaagaactggctcctgatgctgcctggatctcctggcagaggggaacccagagaaag 712

                                                                       
Query: 244 cctcacaggagtgcctgcctcctggggagttctgcactagtccctacccatggtgctagt 303
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 711 cctcacaggagtgcctgcctcctagggagttctgcactagcccctacccatggcgctagt 652

                                                                       
Query: 304 ggtcaccagccccagcagccacactaaagtactcctgtagcttgtgcagggcccggaacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggtcaccagccccagcagccacactaaagtactcctgtagcttgtgcagggcccggaacc 592

                                                                       
Query: 364 gatgagaaatggtgttcttctcagactttggcatctctgcatacctaacaggaaagagaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gatgagaaatggtgttcttctcagactttggcatctctgcatacctaacaggaaagagaa 532

                                                                       
Query: 424 gcagctcagaaaacagggaacccaggtactgggggacaggcacccaactgtctccctgga 483
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 gcagctcagaaaacagggaacccaggtattgggggacaggcacccaactgtctccctgga 472

                                                                       
Query: 484 gcacaaaccttttttttt---aatccaaatttttttttcatttatccttctgtcatatat 540
            |||||| ||||||||||   |||||||||||||||  ||||||||||||||||||||||
Sbjct: 471 acacaaatcttttttttttttaatccaaattttttt--catttatccttctgtcatatat 414

                                                                       
Query: 541 tacatcccaagttttccctccctcctctcctcccagtccctcatctacccacaaatccac 600
           |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct: 413 tacatcccaagttttccctctctcctctcctcccagtccctcatccacccccaaatccac 354

                                                             
Query: 601 tcttccttcaggcctcccagggatattacccaaacatggtatatcatgtt 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcttccttcaggcctcccagggatattacccaaacatggtatatcatgtt 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space:   666240
Effective search space used:   666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no528_k01.g1 MSMg01no528_k01.g1 CHROMAT_FILE:
MSMg01no528_k01.g1 PHD_FILE: MSMg01no528_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:17 2005
         (397 letters)



>mm_chr2_130374060_130374855
          Length = 796

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%), Gaps = 1/397 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtgagcgtaaccccagacatcagtgtcacaactgtaaggatctatatagtgtctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagtgagcgtaaccccagacatcagtgtcacaactgtaaggatctatatagtgtctct 260

                                                                       
Query: 61  tcatacatttcattaaatcccagttctgtcacatggccgaatgtatttcatgcctcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatacatttcattaaatcccagttctgtcacatggccgaatgtatttcatgcctcacac 320

                                                                       
Query: 121 accttacactcctccctgcgctagctttttcaccttcaaactcatcatatagcattagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttacactcctccctgcgctagctttttcaccttcaaactcatcatatagcattagtc 380

                                                                       
Query: 181 tacagcccgggttcagtcgggaccaaataaaactaccttaacccactgttcccatcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagcccgggttcagtcgggaccaaataaaactaccttaacccactgttcccatcagcc 440

                                                                       
Query: 241 agccaaaagggctacatcctccttccccagcccagcttggagggccgtctttatcttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaaaagggctacatcctccttccccagcccagcttggagggccgtctttatcttctg 500

                                                                       
Query: 301 cctcctcccctgtgagtaactgattttatgacctaaagctgctaggtgtgatcttaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cctcctcccctgtgagtaactgattttatgacctaaagctgctaggtgtgatcttcagta 560

                                                
Query: 361 cctatttattagtttgatgggtgggtngggtgggggt 397
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cctatttattagtttgatgggtgggt-gggtgggggt 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 796
Length adjustment: 9
Effective length of query: 388
Effective length of database: 787
Effective search space:   305356
Effective search space used:   305356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)