Query= MSMg01no528_l16.b1 MSMg01no528_l16.b1 CHROMAT_FILE:
MSMg01no528_l16.b1 PHD_FILE: MSMg01no528_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:24 2005
(708 letters)
>mm_chr2_174228169_174229276
Length = 1108
Score = 857 bits (443), Expect = 0.0
Identities = 565/635 (88%), Gaps = 52/635 (8%)
Strand = Plus / Minus
Query: 5 gaattccactctttattattttcttctctctgacaactttgggtttagtttgctgtctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaattccactctttattattttcttctctctgacaactttgggtttagtttgctgtctct 560
Query: 65 ctccatagtttcaaaagtttacagctaaggtcattggctagatatatttctaacataatt 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccccatagtttcaaaagtttacagctaaggtcattggctagatatatttctaacataatt 500
Query: 125 taatactctcaacttttctgaagtaaaaatttcatacttcttatgagaggatgaggcaga 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 taatactctcaacttttctgaagtaactatttcatacttcttatgagaggatgaggcaga 440
Query: 185 aggggcaaggatgcatgtcatagcacacgtacatccatgtgaaggtaagaatatgttcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggggcaaggatgcatgtcatagcacacgtacatccatgtgaaggtaagaatatgttcat 380
Query: 245 gtgagctaagaagacagctttaagaaatgggttctcaggctggtaagatggctcggcggt 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 379 gtgagctaagaagacagctttaagaaatgggttctcgggctggtaagatggctcggcggt 320
Query: 305 taagagcaccgactgctcttccaaaggtcccgagttcaaatcccagcaaccacatggtgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taagagcaccgactgctcttccaaaggtcccgagttcaaatcccagcaaccacatggtgg 260
Query: 365 ctcacaaccatccataacaaaaatctgatgccctcttctggagtatctgaagacagctac 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 ctcacaaccatccataacaaaaatctgatcccctcttctggagtatctgaagacagctac 200
Query: 425 agtgtacacacatataataaataaataaataaataaataaataaatcttttttaaaagaa 484
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 199 agtgtacacacatat----------------aataaataaataaatcttttttaaaagaa 156
Query: 485 agaaag-aaagaaa----------gaa---ag--aaag-----------a-aagaaagaa 516
|||||| ||||||| ||| || | || | || ||| ||
Sbjct: 155 agaaagaaaagaaatgggttctctgaagacagctacagtgtacacacatataataaataa 96
Query: 517 agaaagaaagaaagaaagaaagaaagaaagaaa--------gaaagaaagaaagaaagaa 568
| ||| ||| ||| ||| ||| ||| ||| ||| ||||||||||||||||||
Sbjct: 95 ataaataaataaataaataaataaataaataaatcttttttaaaagaaagaaagaaagaa 36
Query: 569 agaaagaaaagaaatgggttctccagaatgaactc 603
|||||||||||||||||||||||||| ||||||||
Sbjct: 35 agaaagaaaagaaatgggttctccagcatgaactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no528_l16.g1 MSMg01no528_l16.g1 CHROMAT_FILE:
MSMg01no528_l16.g1 PHD_FILE: MSMg01no528_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:24 2005
(635 letters)
>mm_chr2_174111045_174112079
Length = 1035
Score = 1228 bits (635), Expect = 0.0
Identities = 635/635 (100%)
Strand = Plus / Plus
Query: 1 gtgtgccacactgaattcccagcgcgccccaggtttggagttacatacataaacggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtgccacactgaattcccagcgcgccccaggtttggagttacatacataaacggcaaa 260
Query: 61 ggtaagtcacttgttttctatgttctctcccctcctacagaagttagtcttcagcaacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaagtcacttgttttctatgttctctcccctcctacagaagttagtcttcagcaacgg 320
Query: 121 agttggctttaggtagagcccactgggctcgatatggaggtgcacgcaccaactttggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttggctttaggtagagcccactgggctcgatatggaggtgcacgcaccaactttggcg 380
Query: 181 atctgagactgctgcgccatagctacagtattgcaatgcgcagaaagtaactgcgtttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgagactgctgcgccatagctacagtattgcaatgcgcagaaagtaactgcgtttgg 440
Query: 241 gattgggtgacaactctggagcctaaatcgcacgtggcattcagccggcgcggagcctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgggtgacaactctggagcctaaatcgcacgtggcattcagccggcgcggagcctgg 500
Query: 301 aaatcgggtaccggcatggccaatttggggccgcgggaccctggagccagtgcctccccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcgggtaccggcatggccaatttggggccgcgggaccctggagccagtgcctccccc 560
Query: 361 cacgccgtgcaagtagtcttggttaataccgctcacctctggaggttcgaggaggcctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacgccgtgcaagtagtcttggttaataccgctcacctctggaggttcgaggaggcctga 620
Query: 421 gatcgtgaaaaggggcgcgcgcacctctcccgtgcgtcctaaagccaaccttcccgcgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcgtgaaaaggggcgcgcgcacctctcccgtgcgtcctaaagccaaccttcccgcgca 680
Query: 481 gaaaggagtttcttgatagtggatagtgcttggaggacactcagtggtggtatagggttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaggagtttcttgatagtggatagtgcttggaggacactcagtggtggtatagggttc 740
Query: 541 tttacgggtgcccttctgggctacctgggttggcagacagctaggatcacatcggggtat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttacgggtgcccttctgggctacctgggttggcagacagctaggatcacatcggggtat 800
Query: 601 cgcgcagctggttaggcagatccgacttgtccgga 635
|||||||||||||||||||||||||||||||||||
Sbjct: 801 cgcgcagctggttaggcagatccgacttgtccgga 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
