Query= MSMg01no528_o23.b1 MSMg01no528_o23.b1 CHROMAT_FILE:
MSMg01no528_o23.b1 PHD_FILE: MSMg01no528_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:41 2005
(629 letters)
>mm_chr2_19037452_19038483
Length = 1032
Score = 1174 bits (607), Expect = 0.0
Identities = 618/623 (99%), Gaps = 3/623 (0%)
Strand = Plus / Plus
Query: 10 ggaattcttctctgtctggactctgtctgggcataaggtggtgaacttcccatgtgctat 69
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcttctctgtctagactctgtctgggcataaggtggtgaacttcccatgtgctat 269
Query: 70 gatgagtgaccacatgtgaagcagacaggagagctttctctctatcctaaaaacaatctg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gatgagtgaccacatgtgaagcagacaggagagctttctctctatcctaaaaacaatctg 329
Query: 130 ttctgttacatataccttatataaagattgggggagtgtagaagatgcacaagagctcca 189
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 330 ttctgttacatataccttatataaagattgggggagtgtagaagattcacaagagctcca 389
Query: 190 aataagttgatgaacgccccattcatttcccatcaattaccattattaaactcataaagc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aataagttgatgaacgccccattcatttcccatcaattaccattattaaactcataaagc 449
Query: 250 aaataatttaattttt---tttgagatcatactggatttgcttgttaattatttttatga 306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaataatttaatttttttctttgagatcatactggatttgcttgttaattatttttatga 509
Query: 307 gttaaaggtggcttacttttttcactgcatatagatgtgattgcctgaatacatgttatg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gttaaaggtggcttacttttttcactgcatatagatgtgattgcctgaatacatgttatg 569
Query: 367 actatttgaactgcaggaatttccatcttctgtattttttgtctagaatccagctttaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 actatttgaactgcaggaatttccatcttctgtattttttgtctagaatccagctttaaa 629
Query: 427 aatctggactgtgatcctctatgacagtagtgctcaactttcctaatgctgggacccttt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatctggactgtgatcctctatgacagtagtgctcaactttcctaatgctgggacccttt 689
Query: 487 aatacagttccgcatgttgtggtgacctctaaccataaaattaatttcattgcttcttcg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aatacagttccgcatgttgtggtgacctctaaccataaaattaatttcattgcttcttcg 749
Query: 547 taactgtagttttgctactgttatgaatcataatatagggggctggagaaatggctcagt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taactgtagttttgctactgttatgaatcataatatagggggctggagaaatggctcagt 809
Query: 607 gattaagagctctgaatcttcca 629
|||||||||||||||||||||||
Sbjct: 810 gattaagagctctgaatcttcca 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1032
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1022
Effective search space: 632618
Effective search space used: 632618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_o23.g1 MSMg01no528_o23.g1 CHROMAT_FILE:
MSMg01no528_o23.g1 PHD_FILE: MSMg01no528_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:41 2005
(596 letters)
>mm_chr2_19195679_19196675
Length = 997
Score = 1116 bits (577), Expect = 0.0
Identities = 592/597 (99%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 1 tttccattttgggggcaactttgaatctaattctggtcagatccaacagatggcagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttccattttgggggcaactttgaatctaattctggtcagatccaacagatggcagtgat 738
Query: 61 gttataaactgtttaaaatactctcattgcgtgtaggatcgactactcagaaggatgtca 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 737 gttataaactgtttaaaatactctcattgcatgtaggatcgactactcagaaggatgtca 678
Query: 121 accgcaaatcatttgctccatacttgtataaattatttaagaatttggaatgattaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 accgcaaatcatttgctccatacttgtataaattatttaagaatttggaatgattaattg 618
Query: 181 ggcagaaaagtacacagtaaataaaacatgaaattcaactggagatatttcctacattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggcagaaaagtacacagtaaataaaacatgaaattcaactggagatatttcctacattca 558
Query: 241 caaattaaatggcttctcctttccaaaaagcattatacaaagagaactgtccagtatatt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 caaattaaatggcttctcctttccaaaaagcattatacacagagaactgtccagtatatt 498
Query: 301 accagcatagt-aggaaggagcgctgcccgaaattagccgagggggctacctattcatga 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accagcatagtaaggaaggagcgctgcccgaaattagccgagggggctacctattcatga 438
Query: 360 ctgcctattttactgcttcatctcattttcatctttcagacaggcttgtcttcactgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgcctattttactgcttcatctcattttcatctttcagacaggcttgtcttcactgcct 378
Query: 420 cctactttatttacccacttaaaataatttctttctcctttcatttctaacaagagaccc 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 377 cctactttatttacccacttaaaataatttctttttcctttcatttctaacaagagaccc 318
Query: 480 tagcagttcttgtctctcattcagataagtactttgattcctgttagttgttccttattc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagcagttcttgtctctcattcagataagtactttgattcctgttagttgttccttattc 258
Query: 540 ttcaacctttattctgcaagaaacaaaagaccaaaagtaaggatggaaggcttctag 596
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 ttcaacctttattctgcaagaaacaaaagaccaaaagtaaggatggaaggtttctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
