BAC Information

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BAC

Clone NameMSMg01-529G18
Chromosome2 (Build37)
Map Location 47,561,783 - 47,562,100
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529G18.T7 (MSMg01no529_g18.b1)MSMg01-529G18.TJ (MSMg01no529_g18.g1)
ACCAG598306AG598307
length755759
length of high quality
(start - end)		549 (44 - 592)605 (73 - 677)
definitionCHROMAT_FILE: MSMg01no529_g18.b1 PHD_FILE: MSMg01no529_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:22 2005CHROMAT_FILE: MSMg01no529_g18.g1 PHD_FILE: MSMg01no529_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGTGAGTCCATATGAGCCTAGACTGTGGTTTTTTTTAATCATTT
TTTTTTCTGCTCTAATCTTCTTTGTTATGGGTCTACTTAGGTTGTTGGTC
TCTTATTAGTTTAATTTTGGTAGACTGAATGAATTAAGAAATTCATTCAC
TTCTTTAGACTCTGTAACTTTATGGAATACAGGTTTGTAATGGAGTCCCT
AACAATTTCCTGTACTTTGTGGTCTGTTATAATGTTTCAGTTGTCTGATT
CTGATTCTGTTTAATTTGAGCCATTGCTTTCTTTCTTTTGATTAATAGGT
CCAAAAGTTTTTTGATCTTTTAATCTTGCCAGAAACCCTTATCTTTTATT
TCATTATTTTCTGCTTTTGAATTTATTATTTTTGCTGTCTATTGTGCTAG
ATTTTGGGTTGGTCTTTTTTTTTTCAAAAAATATGCAATTGCATCATTAA
TTCCTTTATCCATGCATATTCTAATTTTTAAATGTAGGTGCTTAAGTCTA
TAAGCATCCCTGTGAGAACTAACTTTAATATATTCCAAAGGTTTGGTTGT
GTTGCATTTTTTATTTTCATTTAGTTCCACACATCTTTTCATTTCTTTCT
TGATTTCTTCTTCAATTCATTCATCATTCAGGAATAAGTTGATTATTATC
CACATGTGTAAACATGTGACGAATTTTGTTTGCTCTCTGGTTTAAGTTTT
ATTAC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAAGACTTCCTTACTAAACTCCATAA
TTTCTAGCTATATTCTCAAAATTAACTTTATACCCACAGATAAATATATT
TCTTATCCTTCATCATGGAAGCCTTACAAAAATATGGAATGTTAAAAGTA
TAACTGGTCACAATTCAATGATAGATTGTGATGGGTTCATCTCCAACTGG
TATATCTGCTGTACAACTCCCACACCTAAGACAAAATCACAGAAGAGGGA
GCAGAAAAATTACCAGTACTCAAAATCTTTTGTGAGATTGTGCCTCATAG
AAATAATGTGGAAGCTACATTAATACCTCCGGAATATGCTTGAAAGCAAT
TAAAAATAAAAGACCTGAACAGAGACTAGAGATTAATACTAATACACTAA
GAGAGAAGGGAGAAATTTCATGGAGATCAGCCTATAGAAAAAGTAGTCCA
GAAAAGAAATGAATGGAAAGAGAGGAAGAATTGGCATTTCCCATGCATGA
GCCTCTAACTGGTTATCCAATACAAAGTTGTCATCTCTGAAATTATATAG
ACACAAACCATTGTACAAACTACTTTGCAGGTCATATTTACATATGTATT
AATATACATGCAACAATCATGATCAAAGAAAAGAGGGTATAGATTTGAGG
GGAAGAGAAGACTCAGTGGAGAACAGAAAGGAGAGACATGANAAGAGTTG
AAGGAAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_g18.b1 MSMg01no529_g18.b1 CHROMAT_FILE:
MSMg01no529_g18.b1 PHD_FILE: MSMg01no529_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:22 2005
         (549 letters)



>mm_chr2_47561152_47562100
          Length = 949

 Score =  592 bits (306), Expect = e-173
 Identities = 314/318 (98%), Gaps = 3/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 235 tataatgtttcagttgtctgattctgattctgtttaatttgagccattgctttctttctt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tataatgtttcagttgtctgattctgattctgtttaatttgagccattgctttctttctt 890

                                                                       
Query: 295 ttgattaataggtccaaaagttttttgatcttttaatcttgccagaaacccttatctttt 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 889 ttgattaataggtccaaaagttttttgatcttttaatcttgccagaaacccttatcttct 830

                                                                       
Query: 355 atttcattattttctgcttttgaatttattatttttgctgtctattgtgctagattttgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 atttcattattttctgcttttgaatttattatttttgctgtctattgtgctagattttgg 770

                                                                       
Query: 415 gttggtc---ttttttttttcaaaaaatatgcaattgcatcattaattcctttatccatg 471
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gttggtctttttttttttttcaaaaaatatgcaattgcatcattaattcctttatccatg 710

                                                                       
Query: 472 catattctaatttttaaatgtaggtgcttaagtctataagcatccctgtgagaactaact 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 catattctaatttttaaatgtaggtgcttaagtctataagcatccctgtgagaactaact 650

                             
Query: 532 ttaatatattccaaaggt 549
           ||||||||||||||||||
Sbjct: 649 ttaatatattccaaaggt 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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