BAC Information

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BAC

Clone NameMSMg01-529M08
Chromosome2 (Build37)
Map Location 99,476,049 - 99,476,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529M08.T7 (MSMg01no529_m08.b1)MSMg01-529M08.TJ (MSMg01no529_m08.g1)
ACCAG598573AG598574
length775742
length of high quality
(start - end)		337 (51 - 387)579 (82 - 660)
definitionCHROMAT_FILE: MSMg01no529_m08.b1 PHD_FILE: MSMg01no529_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:52 2005CHROMAT_FILE: MSMg01no529_m08.g1 PHD_FILE: MSMg01no529_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCTTAAGGCCTGTGAACTCCCCAACTCTGGGTTCTTGG
TCCTATTTGCCATATCAGGCATATGTGTACATCATTGAAATTGGCCTTCA
ATCTAATCCTAATACAACTATTCATTCCCATAATAATTGTGCCACTGTTG
TGCACATGAACACTTCTTGCCATAATGGTCATTACTTTAGCTCATTTAAA
CTATACTAGGTCCCCCAAAGGCTCATTACAAAAAAGGGAACAGAAAATGT
ATAAGAGCCAGTGGTCAGGAAGGATAAGATTGAAACACTGTGTTTTAAAT
GAGAATGGGTGGGTAGGGAAGNTGGGGGGGAGGGTATNNNNNTTTNNNNT
TTTTTTTTTNTTTTTTTTTNTTTNNTTTTTTTTTTTTNTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTNNTTTTTNTNTTTTTTTTTTTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTTTTTTTTTTATTTTNTTTTTTTTTTTTTNTTTT
TTNNTTTTTTTTTTTNTTNTTCCNTTTTTTTTTTTTTTTTTTTTNTTTNT
TTTNNTTTTTTTTTTTTTTTCTTTTTTTTGTTTCCTTTTCNNNTTTTCTC
CCTCCTCTTCCCCTCTCTTTTCCCCTTTTATCCTTTCCTTTCTTCTTCTT
TTTTTTTTTCTTCCTTCCTTTTTCTCTTTTTTATCCTTCCCCTCTTCTTA
TTCTGCTCTTAACTCTCCTCTTTTT

NCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATCCATTGTCATGGTA
TTCCACAAAGCATTGCTTCTTATGCATTGTCGTGGTATTCCACAAAGCAT
TGCTTCTGAGCAAGGAATTCACTTCAGATCAGAGAAGTATGACAATGAGT
CCATGATCATGAAATTAACTAGTCTTACCATATGGAAAGGCTTTTGAAGA
CACAGTGCCAATTATGGGACAATAGCCTAGAGGGCTGAGGCAGAGTTATC
CAGAAGGTAGTAAATAATTTTAATCAGTATTTAATGCGTGGTACCATTTC
TCTTATATCCAGAATTCACAGGGTCAGAAATCAAGTAGTGGAAATAGAGT
AATTCTATACACTATAACCACTAGGAAAACAAACAAACAAACAAACAAAC
AACAAAACAAAACAAAAAAAACTAGAATACATTTTGATTCCTGTTTCCAT
GACTTTTATTTTTGCTATCAGAGAAGCACTGGTTTCACAAAAAGAAACGT
TTATACCATGAGAAATAACCAACCAACATTCCACTGGAATAGAATCTCAG
AACCTACCCCCACCCCACCCCATCCCCTACCCTATCCCACACCCCCACTC
CTGCTCACTTAGGAATGCTAATGTCTTATGGTCAGCAAGCTTAGAAGACA
GAGGTAGACAGGATGGCATTACAGATTACCATGGAGAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_m08.b1 MSMg01no529_m08.b1 CHROMAT_FILE:
MSMg01no529_m08.b1 PHD_FILE: MSMg01no529_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:52 2005
         (337 letters)



>mm_chr2_99475845_99476580
          Length = 736

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%), Gaps = 1/333 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcttaaggcctgtgaactccccaactctgggttcttggtcctatttgccata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcttaaggcctgtgaactccccaactctgggttcttggtcctatttgccata 264

                                                                       
Query: 65  tcaggcatatgtgtacatcattgaaattggccttcaatctaatcctaatacaactattca 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaggcatatgtgcacatcattgaaattggccttcaatctaatcctaatacaactattca 324

                                                                       
Query: 125 ttcccataataattgtgccactgttgtgcacatgaacacttcttgccataatggtcatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcccataataattgtgccactgttgtgcacatgaacacttcttgccataatggtcatta 384

                                                                       
Query: 185 ctttagctcatttaaactatactaggtcccccaaaggctcattacaaaaaagggaacaga 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 385 ctttagctcatttaaactatactaggtcctccaaaggctcattacaaaaaacggaacaga 444

                                                                       
Query: 245 aaatgtataagagccagtggtcaggaaggataagattgaaacactgtgttttaaatgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatgtataagagccagtggtcaggaaggataagattgaaacactgtgttttaaatgaga 504

                                            
Query: 305 atgggtgggtagggaagntgggggggagggtat 337
           ||||||||||||||||| ||| |||||||||||
Sbjct: 505 atgggtgggtagggaag-tggcggggagggtat 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space:   238456
Effective search space used:   238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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