BAC Information

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BAC

Clone NameMSMg01-529M21
Chromosome2 (Build37)
Map Location 140,835,220 - 140,835,551
singlet/doubletsinglet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529M21.T7 (MSMg01no529_m21.b1)MSMg01-529M21.TJ (MSMg01no529_m21.g1)
ACCAG598599AG598600
length781763
length of high quality
(start - end)		330 (43 - 372)609 (71 - 679)
definitionCHROMAT_FILE: MSMg01no529_m21.b1 PHD_FILE: MSMg01no529_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005CHROMAT_FILE: MSMg01no529_m21.g1 PHD_FILE: MSMg01no529_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTCCTTCTGGGTGACTCTCACACTTAGGATGTAGAATGTCTAATCC
CAGGTGATCACTCCTGGCCACACATACATATAAGCACTATTAACATATAT
GCCTATATTTGTAATAATAATTAAAGAAGAGACCATACATTTGCAAAGGA
GAACATAGGAGGTTATAGAAGGAAGGAGGATGAAATTATTTAAATAAAGT
ATTTGTGTAAAAGGTTCTCAAAAAATTAAATGTAAAAAAGAAAGAAAGAA
AGAGAGAGAGAGAGAGAGGAGAGAGAAAGAAAGAGAGAGAGAGGGAGGGA
GGGAGGAGGGAGGGAGGAAGNTATTTTTNTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTNTTTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTCTCTTTTTTTTTTCTTNCTTTTTTNNTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTCNTCTTTTTCTCTCTTTTTCCCCCTTTTTCCTTTT
TTCTTTTTTCCCCTTTCTTTCCCTTTCCTCCTTTCTCTTTTTCTTTTTTT
CTTTCCTCCTTCCTTTTTCCTCCCTTTCTTCNTTTCTCTTTTTTTTTCCT
CCCTCTCCTCTTTTCCCCTTTTTTTTTCTTTCTTCCCCCCTTTTTTTCTT
TCCCTTCTCCTCTCTTCTTTTTCTCCCTTTTTTTTTTTTTTCCCCCTTCC
TTCCCCTTTTTTTCCTCTCCCTCTTTTTTTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAAATAAGAAAGAACATACACCTTTGTCT
TTCTGGGCCAGGTAACTAATCAATATAATATTTTCAAGTTCCAGCAATTT
GCCTGCAAATTTTATTTTAGTTTTCTTTACAGGTGGATAGTACTCTATTG
AATATATGTCCCACATTTTCATCTTTTATTCATCAATTGAAAAATATTTA
GTTCTATCTATAAGCTATTATGAATAGACTGAAAGTGACCATAGCTAAGC
AAGTATCTGTAGAGTAGGATATTGAGTCTTTTGGACATATATCCAGGAAT
AGTACGGCTTGCTCGTAAGATAGGTCTGATTTTGGAGTATGAGAATTCTC
TATGCCCATTTCTTGAGTGGCTGCACCAGTTCACAGTCTTACCAAACTGC
ATGAGTTCTCTTTTCCCTCACACCCTTGCCAGCATTTGTTGTCAGTTGTT
TTTCAGATAGCAGCGATTTGAACAGTGTGAAAAGATATTGTGCCTTTTGG
GTTTTGACTCCTTGATTTTGAGGTTCTTTCTATATTTTGAGTATTAATTC
TCTGTTAGATGAATATATCTGGCAATGATTGTCTCCAAATTTGTGGGCTT
CCTTTCCTCTTGATTGTTTTCTTGTCCTACAGAAGGAGGTCCCATTTGTT
CCTTGAGAGCCTTAATTCTTGAGCACATGAAGTCTTATGCAGGCAGTCCT
TCCCCTCACGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_m21.b1 MSMg01no529_m21.b1 CHROMAT_FILE:
MSMg01no529_m21.b1 PHD_FILE: MSMg01no529_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:54 2005
         (330 letters)



>mm_chr2_140835106_140835835
          Length = 730

 Score =  557 bits (288), Expect = e-163
 Identities = 318/332 (95%), Gaps = 9/332 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcacttccttctgggtgactctcacacttaggatgtagaatgtctaatcccaggtga 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aattcacttccttcagggtgactctcacacttaggatgtagaatgtctaatcccaggtga 387

                                                                       
Query: 66  tcactcctggccacacatacatataagcactattaacatatatgcctatatttgtaataa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcactcctggccacacatacatataagcactattaacatatatgcctatatttgtaataa 327

                                                                       
Query: 126 taattaaagaagagaccatacatttgcaaaggagaacataggaggttatagaaggaagga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 taattaaagaagagaccatacatttgcaaaggagaacataggaggttatggaaggaagga 267

                                                                       
Query: 186 ggatgaaattatttaaataaagtatttgtgtaaaaggttctcaaaaaattaaatgtaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggatgaaattatttaaataaagtatttgtgtaaaaggttctcaaaaaattaaatgtaaaa 207

                                                                       
Query: 246 aagaaagaaagaaagagaga--ga------gagagagaggagagagaaagaaagagagag 297
           |||||||||||||||| |||  ||      ||||||||||||||||||||||||||||||
Sbjct: 206 aagaaagaaagaaagaaagaaagaaagaaagagagagaggagagagaaagaaagagagag 147

                                           
Query: 298 agagggagggagggagg-agggagggaggaag 328
           ||||||||||||||||| ||| ||| ||||||
Sbjct: 146 agagggagggagggagggaggaaggaaggaag 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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