Query= MSMg01no529_o20.b1 MSMg01no529_o20.b1 CHROMAT_FILE:
MSMg01no529_o20.b1 PHD_FILE: MSMg01no529_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:04 2005
(210 letters)
>mm_chr2_68855232_68855846
Length = 615
Score = 281 bits (145), Expect = 3e-80
Identities = 190/209 (90%), Gaps = 11/209 (5%)
Strand = Plus / Minus
Query: 4 ggaattccttcttgcctc-aatcataaaatgaatatgtaactgcctcaaccgctacagaa 62
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 347 ggaattccttcttgcctcaaatcataaaatgaatatgaaactgcctcaaccgctacagaa 288
Query: 63 gggagagttaatgtgaatataatgaccacttcggactagaa----acttttatgccgttc 118
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 287 gggagagttaatgtgaatataatgaccacttcggactagaaacatacttttatgccgttc 228
Query: 119 tgaatttcggttggtgatgacccagaagaggaggaggaggaggaggaggaggaggaggag 178
||||||||||||||||||||||| |||||||||||| || || || || |||||||||
Sbjct: 227 tgaatttcggttggtgatgaccc---agaggaggaggaagaagaagaagaagaggaggag 171
Query: 179 gaagaagaagaggaagaggaggagaaaga 207
||| ||| |||||||||||||| ||||
Sbjct: 170 aaag-aga--aggaagaggaggaggaaga 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 615
Length adjustment: 9
Effective length of query: 201
Effective length of database: 606
Effective search space: 121806
Effective search space used: 121806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no529_o20.g1 MSMg01no529_o20.g1 CHROMAT_FILE:
MSMg01no529_o20.g1 PHD_FILE: MSMg01no529_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:04 2005
(669 letters)
>mm_chr2_68709177_68710249
Length = 1073
Score = 1197 bits (619), Expect = 0.0
Identities = 655/673 (97%), Gaps = 12/673 (1%)
Strand = Plus / Plus
Query: 1 tctggagttagttgtcctcaactgaaaaatgggggtagaggtgcctgctttgtagttctg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggagtcagttgtcctcaactgaaaaatgggggtagaggtgcctgctttgtagttctg 260
Query: 61 aaaggggacccaattaaaactacacatcgtgtcattcggatacggcagtgtagggtttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggggacccaattaaaactacacatcgtgtcattcggatacggcagtgtagggtttag 320
Query: 121 cacctcctgggaagtaatgttcagtaatggaattt--agcctgttagtgtggggggcatg 178
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cacctcctgggaagtaatgttcagtaatggaatttttagcctgttagtgtggggggcatg 380
Query: 179 ggagggtgctgcggtgcaggctatgaggtccaggtatgtacttgaccctgggactggaag 238
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggagggtgctgtggtgcaggctatgaggtccagttatgtacttgaccctgggactggaag 440
Query: 239 attgaaatggttgagtaaatatttagtgttgggacttgaagcactgtcttcagcagtgcc 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgaattggttgagtaaatatttagtgttgggacttgaagcactgtcttcagcagtgcc 500
Query: 299 tgcctggttagggaggaagacgcaggcacaccccctcaactctccgtaacgagtagtgcg 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tgcctggttagggaggaagacgcaggcacaccccctcaactctccgtaaggagtagtgcg 560
Query: 359 c--cagagactgcttgtttggttacacaaaggtcatctgttttgaagaggtgacggccag 416
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgccagagactgcttgtttggttacacaaaggtcatctgttttgaagaggtgacggccag 620
Query: 417 tgacaagccacatcaaatctggatccctggatccccggatcctgcacctttgaccaggag 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacaagccacatcaaatctggatccctggatccccggatcctgcacctttgacc----- 675
Query: 477 ctcttgggagaaatctttctctagggttttctaaggaaactccattcctgccctaccttg 536
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 ---ttgggagaaatctttctctagggttttctaaggaaactccattcctgtcctaccttg 732
Query: 537 cagggaatctcagctcacctcccactcctggtctcatctctgttttattgcctgcagacc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagggaatctcagctcacctcccactcctggtctcatctctgttttattgcctgcagacc 792
Query: 597 caagggaaatgggctcatttgctattaccactggtagtagcaaacataaaaattggcatt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 caagggaaatgggctcatttgctattaccactggtagtagcaaacataaaaattggcatt 852
Query: 657 cgtattgactaag 669
|||||||||||||
Sbjct: 853 cgtattgactaag 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1073
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1063
Effective search space: 700517
Effective search space used: 700517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
