Query= MSMg01no530_a11.b1 MSMg01no530_a11.b1 CHROMAT_FILE:
MSMg01no530_a11.b1 PHD_FILE: MSMg01no530_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:13 2005
(690 letters)
>mm_chr2_59595900_59596990
Length = 1091
Score = 489 bits (253), Expect = e-142
Identities = 262/265 (98%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaagagctttctctggagggg-aaaaaagaaatcataaaattataaagaatcc 62
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagagctttctctggaggggaaaaaaagaaatcataaaattataaagaatcc 263
Query: 63 caatggatgtggtaatatatacctgtattcactccagaggctgcggcagaaggatggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatggatgtggtaatatatacctgtattcactccagaggctgcggcagaaggatggatg 323
Query: 123 tcagttaggcctgcctgactcaaaaataaaacaaaagtgccagatccttctgataagttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagttaggcctgcctgactcaaaaataaaacaaaagtgccagatccttctgataagttt 383
Query: 183 tggttgggagaggggaataagactcagcattcccagttcccagatctgtgccggactgtt 242
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tggttgggagagggaaataagactcagcattcccagttcccagatctgtgtcggactgtt 443
Query: 243 ggccacacccaacttgagggcagct 267
|||||||||||||||||||||||||
Sbjct: 444 ggccacacccaacttgagggcagct 468
Score = 188 bits (97), Expect = 2e-51
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 586 cttgtgtctgctctgaactgacagcctgtgtattcaagggagggaagggccagcctttag 645
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 467 cttgtgtctgctctgaactgacagcctatgtattcaagggagggaagagccagcctttag 526
Query: 646 gcgtgtttgggtcctggtaaggacacacattgtatgttctgaagc 690
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcgtgtttgggtcctggtaaggacacacattgtatgttctgaagc 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space: 735080
Effective search space used: 735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_a11.g1 MSMg01no530_a11.g1 CHROMAT_FILE:
MSMg01no530_a11.g1 PHD_FILE: MSMg01no530_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:13 2005
(618 letters)
>mm_chr2_59654162_59655178
Length = 1017
Score = 1141 bits (590), Expect = 0.0
Identities = 611/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 1 cttatctaagcaaaggagtcccaggactgaaaaagagcccaaagcccagctctgacatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 cttatctaagcaaaggagtcccaggactgaaaaagagcccaaagcccagctctgacatgt 758
Query: 61 ttgtttgcaaaattagaggcatgctgcctcataacttggactctccaagagtccccaaca 120
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 757 ttgtttgcaaaattaggggcatgctgcctcataacttggactctgcaagagtccccaaca 698
Query: 121 tgacagctagcctcttgctgcaagctctcagatatgacagaggaagaactgctgggctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 697 tgacagctagcctcttgctgcaagctctcagatatgacagaggaagaactgctggactca 638
Query: 181 gaagaaagctaagagatagctggtatccagaaattggggcaaatgtcacatagcaataag 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 637 gaagaaagctaagagatagctggtatccagaaattggggcaaatgccacatagcaataag 578
Query: 241 gcttgtatttcaaacaccagagctgaggttcatgtgtcccaaatgctggacttacaacat 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 577 gctt-tatttcaaacaccagagctgaggttcatgtgtcccaaatgctggacttataacat 519
Query: 301 ttctgtacctactataagcctaaatgaactaactaggcaaaagacaacaaacagtgcttt 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 518 ttctgtacctactataagcctaaattaactaactaggcaaaagacaacaaacagtgcttt 459
Query: 361 atcgactgtcactcaacaggctcgcttgcctgtgaaatgcatataacgcttatattaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atcgactgtcactcaacaggctcgcttgcctgtgaaatgcatataacgcttatattaagc 399
Query: 421 taaagagggcttatgctgagctcagcattcatctcacttcattgtagcagacagttatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taaagagggcttatgctgagctcagcattcatctcacttcattgtagcagacagttatct 339
Query: 481 aatggtaacagcaagaggttggtagaaggctcctggggtcatgggattccaacagacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aatggtaacagcaagaggttggtagaaggctcctggggtcatgggattccaacagacaga 279
Query: 541 gagaggcccagtgttccagaagggaaaaggaaagatgacattaggcagcttccacaactc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gagaggcccagtgttccagaagggaaaaggaaagatgacattaggcagcttccacaactc 219
Query: 601 aagctcaggacctctaag 618
||||||||||||||||||
Sbjct: 218 aagctcaggacctctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
