Query= MSMg01no530_d05.b1 MSMg01no530_d05.b1 CHROMAT_FILE:
MSMg01no530_d05.b1 PHD_FILE: MSMg01no530_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:26 2005
(725 letters)
>mm_chr2_104692535_104693659
Length = 1125
Score = 1160 bits (600), Expect = 0.0
Identities = 675/720 (93%), Gaps = 33/720 (4%)
Strand = Plus / Plus
Query: 6 gaattcaagaatgaaatgcgaactggctcctgtgtgggcttggggatggactcaagggct 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagaatgaaatgggaactggctcctgtgtgggcttggggatggactcaagggct 265
Query: 66 gtgacggaagtgtttgggtggtggtcacgaagctcttccgtgtaaggtcacattcccggc 125
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgacggaagtgtttgggtggtggtcacgaagctcttccgtgtaagg------------- 312
Query: 126 cttagagacactcagctgactgtagctctggaataggagaggaactgaacttacattctt 185
|||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct: 313 ---------------ctgactgtagttctggaataggagaggagctgaacttacat-ctt 356
Query: 186 ggtgacatttagccttgacatttcaacagcaactggctgctgttttaatttatcccagta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggtgacatttagccttgacatttcaacagcaactggctgctgttttaatttatcccagta 416
Query: 246 aaatcagtaagcaaagaagaaatgactcctactcctcaatgttaaatgtgtatccgtgcg 305
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 417 aaatcagtaagcagagaagaaatgactcctactcctcaatgttaattgtgtatccgtgcg 476
Query: 306 aaggtatttctcggagttattgcatagggattaaagactggttttatatgtttgccggga 365
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 477 aaggtatttctcggagttattgcataggggttaaagactggttttatatgtttgccggga 536
Query: 366 accctggtgggaaacttttgatggagtttagatttaattccatcatataagtagcaaaat 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gccctggtgggaaacttttgatggagtttagatttaattccatcatataagtagcaaaat 596
Query: 426 atttcaataaaaatcaaggatcctgaaaaatgtcatctatttcctttcatgagccgtgat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atttcaataaaaatcaaggatcctgaaaaatgtcatctatttcctttcatgagccgtgat 656
Query: 486 gagaattatgttctgataaaaaaaaaaaagtcctatcgtcctttcaaggcacctagaaac 545
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 657 gagagctatgttctgataaaaaaaa----gtcctatcgtcctttcaaggcacctagaaac 712
Query: 546 ctgaaatggtgtggttctgagctctccccagggccctgtgataaggacttttgtcacagt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctgaaatggtgtggttctgagctctccccagggccctgtgataaggacttttgtcacagt 772
Query: 606 ttgtcatagagcttgtcactgtgcgcatggaccttacgttttttacagctgccttcagtt 665
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 773 ttgtcatagagcttgtcactgtgcgcatggaccttacattttttacagctgccatcagtt 832
Query: 666 cttttcccatccctcacttcttatcataagctttgttcctcccacttaccctctcaggac 725
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cttttcccatccctcatttcttatcataagctttgttcctcccacttaccctctcaggac 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space: 797225
Effective search space used: 797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_d05.g1 MSMg01no530_d05.g1 CHROMAT_FILE:
MSMg01no530_d05.g1 PHD_FILE: MSMg01no530_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:26 2005
(606 letters)
>mm_chr2_104838753_104839758
Length = 1006
Score = 1135 bits (587), Expect = 0.0
Identities = 603/609 (99%), Gaps = 3/609 (0%)
Strand = Plus / Minus
Query: 1 tttaaagaaaggaactaatgagggattattgggggatgatacctatggggggcttcacct 60
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 956 tttaaagaaaggaactaatgagggattgttgggggatgatacctatagggggcttcacct 897
Query: 61 caaaaaagggaaacgtggagtggggg-aggatctgtgggagggaatact--ggggggaac 117
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct: 896 caaaaaagggaaacgtggagtgggggaaggatctgtgggagggaatactgggggggggac 837
Query: 118 tgatattaggatgtaaagtgtataaatgaatttaagaataacaaaaaaggaaccaacaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tgatattaggatgtaaagtgtataaatgaatttaagaataacaaaaaaggaaccaacaaa 777
Query: 178 cagtgctttgaaggaaataaaggggagacaagttaaaggtgcctaggtgctaacagcaag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cagtgctttgaaggaaataaaggggagacaagttaaaggtgcctaggtgctaacagcaag 717
Query: 238 ctctgtaaatacaacatggggtcttcatcatagtaggaaaagttgaagtgaagatagcta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctctgtaaatacaacatggggtcttcatcatagtaggaaaagttgaagtgaagatagcta 657
Query: 298 taaaccttacatgaacaatcctttacccgagtgcatcaacctcactaatgaaagcattta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taaaccttacatgaacaatcctttacccgagtgcatcaacctcactaatgaaagcattta 597
Query: 358 tcaacatttaatcaattatgttatccagcatctcttctacttttcttcttttgggctggt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcaacatttaatcaattatgttatccagcatctcttctacttttcttcttttgggctggt 537
Query: 418 tgtcgctttctaagctgagtaacttttcaatttcagtgagtctattcatcacaaggctct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgtcgctttctaagctgagtaacttttcaatttcagtgagtctattcatcacaaggctct 477
Query: 478 gccagtcattgttaccaggagaaaaggtgagtggatcaggagaatctgtaaccttgactg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gccagtcattgttaccaggagaaaaggtgagtggatcaggagaatctgtaaccttgactg 417
Query: 538 tctgggaatggctttgttgcacagttgagatcaaaggctctgctttcacctaggaaagat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctgggaatggctttgttgcacagttgagatcaaaggctctgctttcacctaggaaagat 357
Query: 598 cacctttat 606
|||||||||
Sbjct: 356 cacctttat 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
