BAC Information

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BAC

Clone NameMSMg01-530H06
Chromosome2 (Build37)
Map Location 151,903,629 - 151,904,243
singlet/doubletsinglet
Overlap geneScrt2
Upstream geneLOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
Downstream geneSrxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530H06.T7 (MSMg01no530_h06.b1)MSMg01-530H06.TJ (MSMg01no530_h06.g1)
ACCAG599088AG599089
length775783
length of high quality
(start - end)		691 (71 - 761)623 (72 - 694)
definitionCHROMAT_FILE: MSMg01no530_h06.b1 PHD_FILE: MSMg01no530_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:46 2005CHROMAT_FILE: MSMg01no530_h06.g1 PHD_FILE: MSMg01no530_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAGATGGGCG
GAATTCTCAAAAGGGTACTCTTGAAGACAGAGAAACACTTAAAAAATGTA
TAGCATCTTTAGCCATCAAGAAAATGCAAATCAAAACGACTCTGAGAGTC
CATCTTACACCTGTCAGAGTGGCTAAGATCAAGTGACAGCTCATGCTGAC
AAGGATGTGGAGCAAGGGGGGGACACTCCTCTGTTGCTGGTGGGACTGCA
AACTTGCACAGCTATTTTGGAAATCAATATGGTGATTTCTCAGAAAATTT
GGAATCGATCTATCTCAAGTCCCAGCTACACCACTCCCGAACATATACCC
AAATATACCCAAAGGATGCTCCATCCTACCACAAGGACACCTGCTCAACT
ATATCCAAAGCAGCTCTATTCATAATTATCAGAAACTAAAAGCAACCTAG
ATGTCCCACAACTGAAGAATGGACAAATAAAATGTGGTACATCTACACAC
TGGAGAATTACTCAGCTGTTAAAAATCATGACATCATGAAATTGGCAGGC
AAATGGGTGCAACTAGAAAAAAATCATCCAGAGTGAGAAAAGCCAGACCC
AGAAAGGCAAATATGGTATGCACTCAGCTAGAAGGGAAATTAGCTGTAGA
AGGATAATTACGCTACAATCCACAGACCCAGAGACGCTAAGTAAACAAGG
AGGTTTCGGGGGAGACAAACGGATCTCCCTGGGGAGGGGTAATAGAGTAG
ATTTCGTGGGTGTTCTGGAAGAGAG

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAGTGGAAATAAGCCTGTCTCCCCCAAC
TTTCTTCTGCTGTTGCTTTAGACTCCTTGTGTATGAGTGTTTTGCCTGCA
TTGTGTGTGTGTGCACCATGTGTGTGCCTGGTGCCTGAAGAGCTCAGAAG
AGGGCATTGGATCCCCTGGAACTGAACCCAGGTGTCCTGCAAGAGCAATA
ACTGCTCTTAACTGCTGAGCCATCTCTCTAAATCCTACAACTTGATGTTT
TGTTGTCAGCAACAGAAATGAAGCTTAGACAGCAGTTAAGAAGAAATGTG
AGGACCCAAGGTTCAAAGCACCTCTGTAGGATAATGCTAAACTTATAGCT
TTGGCACAAAGGACACCAAGAAGAGACTTCTGTCCCATCTTTCCCAATAG
GAGCTTACCACTTGTCCCCAAGTCACATAAATTAAAAAAGCACTCTATTC
CCAAGGGCATCGGCTACAGTATTGAAGTCAGAGTGAGAATCCCAATTGGC
CTGAGTGGAGACAAGTTTCCAGGAAGACCTCTAAGGATGTGGATGCCCAC
ATGGGAGAGCACATGGCTTTACGCTGAGTGAAGGATGCAGAATCCAGAAA
TCCCTCTCAGCTGCTTCGCAAGTGTAAGCCCACATCTGAACAAATAGGCA
CTGATAGGAANGTGGCGGCTGGAACTTACACCGTGACTTCATACTCCCTT
TTCTATTTCCCCCACAGGACACACACACACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_h06.g1 MSMg01no530_h06.g1 CHROMAT_FILE:
MSMg01no530_h06.g1 PHD_FILE: MSMg01no530_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:47 2005
         (623 letters)



>mm_chr2_151903220_151904243
          Length = 1024

 Score = 1120 bits (579), Expect = 0.0
 Identities = 606/615 (98%), Gaps = 2/615 (0%)
 Strand = Plus / Minus

                                                                        
Query: 11   taagcctgtctcccccaactttcttctgctgttgctttagactccttgtgtatgagtgtt 70
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taagcctgtctcccccaactttcttctgctgttgctttagactccttgtgtatgagtgtt 965

                                                                        
Query: 71   ttgcctgcattgtgtgtgtgtgcaccatgtgtgtgcctggtgcctgaagagctcagaaga 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  ttgcctgcattgtgtgtgtgtgcaccatgtgtgtgcctggtgcctgaagagctcagaaga 905

                                                                        
Query: 131  gggcattggat-cccctggaactgaacccaggtgtcctgcaagagcaataactgctctta 189
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  gggcattggatccccctggaactgaacccaggtgtcctgcaagagcaataactgctctta 845

                                                                        
Query: 190  actgctgagccatctctctaaatcctacaacttgatgttttgttgtcagcaacagaaatg 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 844  actgctgagccatctctctaaatcctacaacttgatgttttgttgtcagcaactgaaatg 785

                                                                        
Query: 250  aagcttagacagcagttaagaagaaatgtgaggacccaaggttcaaagcacctctgtagg 309
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  aagcttagacagcaattaagaagaaatgtgaggacccaaggttcaaagcacctctgtagg 725

                                                                        
Query: 310  ataatgctaaacttatagctttggcacaaaggacaccaagaagagacttctgtcccatct 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 724  ataatgctaaacttatagctttggcacaaaggacaccaagaagagacttctgttccatct 665

                                                                        
Query: 370  ttcccaataggagcttaccacttgtccccaagtcacataaattaaaaaagcactctattc 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  ttcccaataggagcttaccacttgtccccaagtcacataaattaaaaaagcactctattc 605

                                                                        
Query: 430  ccaagggcatcggctacagtattgaagtcagagtgagaatcccaattggcctgagtggag 489
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 604  ccaagggcatcagctacagtattgaagtcagagtgagaatcccaattggcttgagtggag 545

                                                                        
Query: 490  acaagtttccaggaagacctctaaggatgtggatgcccacat-gggagagcacatggctt 548
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 544  acaagtttccaggaagacctctaaggatgtggatgcccacatagggagagcacatggctt 485

                                                                        
Query: 549  tacgctgagtgaaggatgcagaatccagaaatccctctcagctgcttcgcaagtgtaagc 608
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 484  tacgctgagtgaaggatgcagaatccagaaatccctctcagttgctttgcaagtgtaagc 425

                           
Query: 609  ccacatctgaacaaa 623
            |||||||||||||||
Sbjct: 424  ccacatctgaacaaa 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space:   621582
Effective search space used:   621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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