Query= MSMg01no530_h21.b1 MSMg01no530_h21.b1 CHROMAT_FILE:
MSMg01no530_h21.b1 PHD_FILE: MSMg01no530_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:50 2005
(686 letters)
>mm_chr2_147903905_147904984
Length = 1080
Score = 1207 bits (624), Expect = 0.0
Identities = 667/684 (97%), Gaps = 10/684 (1%)
Strand = Plus / Plus
Query: 5 gaattcctggtcttc-tcggaactgctataggatttgagattggcagctctctcagatta 63
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggtctccat-ggaactgctataggatttgagattggcagctctctcagatta 263
Query: 64 cataagatagaagaagaaacatttgaagagagaagctgaccaccaaagctggcaactttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cataagatagaagaagaaacatttgaagagagaagctgaccaccaaagctggcaactttg 323
Query: 124 agaagatacatgccaataaggagcctgagtctctaagccagactgcttcagggtccacag 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 agaagatacatgccaataaggagcccgagtctctaagccagactgcttcagggtccacag 383
Query: 184 aagacactttctgatctttcctctgaagtctattaaaagcagagaaagtgggggttacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagacactttctgatctttcctctgaagtctattaaaagcagagaaagtgggggttacta 443
Query: 244 atagaaaagttccagaaaggcttagtgaaataacttagcaaaacagcacatgaatgaccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atagaaaagttccagaaaggcttagtgaaataacttagcaaaacagcacatgaatgaccc 503
Query: 304 ctttgactgtctgtgcaagtctcttgcaagtgagggaggccattgagctattcctgtttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttgactgtctgtgcaagtctcttgcaagtgagggaggccattgagctattcctgtttc 563
Query: 364 tacttttgctcctgtgccttagtcattaaacctcctgggggacccttgctccttggcgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 tacttttgctcctgtgccttagtcattaaacctcctgggggacccttgctccttggcaga 623
Query: 424 ctgagctgggagttgaagagggcctctgtgtctgtcaccctatacaccagcatttgggag 483
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgggctgggagttgaagagggcctctgtgtctgtcaccctatacaccagcatttgggag 683
Query: 484 ttacaaatctctatgtttgaaaagttactttcttagacatcattctaggtatattcacca 543
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttacagatctct--gtttgaaaagttactttcttagacatcattctaggtatattcacca 741
Query: 544 tacaaaaaagaaatcagatagctctaatagagtaatctttctaaaatatttcaagctccc 603
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tacaaaaaagaaatcag----ctctaatagagtaatctttctaaaatatttcaagctccc 797
Query: 604 tctagaagatgccctatcccc-caaatgtactacaaaattaaaaaatgaaagtaacaaag 662
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 798 tctagaagatgcccta-ccccgcaaatgtactacaaaattaaaaaatgaaagtagcaaag 856
Query: 663 tttgtattcccacatttctttaaa 686
||||||||||||||||||||||||
Sbjct: 857 tttgtattcccacatttctttaaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1080
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1070
Effective search space: 723320
Effective search space used: 723320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_h21.g1 MSMg01no530_h21.g1 CHROMAT_FILE:
MSMg01no530_h21.g1 PHD_FILE: MSMg01no530_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:50 2005
(579 letters)
>mm_chr2_148064485_148065463
Length = 979
Score = 1023 bits (529), Expect = 0.0
Identities = 559/579 (96%), Gaps = 16/579 (2%)
Strand = Plus / Minus
Query: 1 atctgtcatattcagctgggtattaaccttcagagggaatgacaaacctgcacacagagc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 677 atctgtcatattcagctgggtagtaaccttcagagggaatgacaaacctgcacacagagc 618
Query: 61 agagctaccattgtggtctgtaactcagataaggctaatcaaatctcatgctttgtggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agagctaccattgtggtctgtaactcagataaggctaatcaaatctcatgctttgtggtc 558
Query: 121 cagaaagctttctcccatgcctggggctcttgtactgtctacagccagccagctgctggc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 557 cagaaagctttctcccatgcctggggctcttgtactgtctatagccagccagctgctggc 498
Query: 181 tccgaggctgtgggaggtttaggcttcagagctacccatgccgaggggggaaattccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccgaggctgtgggaggtttaggcttcagagctacccatgccgaggggggaaattccatc 438
Query: 241 tcttaagggtcagagaagtcaagcccattctgtccatatcatgtgatcctgtctgctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcttaagggtcagagaagtcaagcccattctgtccatatcatgtgatcctgtctgctctt 378
Query: 301 tccctccaagcagccagagagtcagtgtctgagggtgggggacagaatctccagaaagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tccctccaagcagccagagagtcagtgtctgagggtgggggacagaatctccagaaagga 318
Query: 361 cgcctgaattcagaatgtctgggaatagttctcaaggctagcagctgacctagtcctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgcctgaattcagaatgtctgggaatagttctcaaggctagcagctgacctagtcctgct 258
Query: 421 tctggagatagtaactggaagcttattgggtctctcttctttcataggcacacagagtct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctggagatagtaactggaagcttattgggtctctcttctttcataggcacac------- 205
Query: 481 ctgagtgagagagcccaggcaggctttgtagattaagactgtctaaaacagctgaccatg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ---------agagcccaggcaggctttgtagattaagactgtctaaaacagctgaccatg 154
Query: 541 catgtagagcctatacaagctccaaatgatgcttttgtc 579
|||| | ||||||||||||||||||||||||||||||||
Sbjct: 153 catgcacagcctatacaagctccaaatgatgcttttgtc 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
