BAC Information

Click to search

BAC

Clone NameMSMg01-530L23
Chromosome2 (Build37)
Map Location 104,758,555 - 104,758,966
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneCcdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530L23.T7 (MSMg01no530_l23.b1)MSMg01-530L23.TJ (MSMg01no530_l23.g1)
ACCAG599312AG599313
length782777
length of high quality
(start - end)		412 (245 - 656)609 (81 - 689)
definitionCHROMAT_FILE: MSMg01no530_l23.b1 PHD_FILE: MSMg01no530_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:10 2005CHROMAT_FILE: MSMg01no530_l23.g1 PHD_FILE: MSMg01no530_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAGCTTATTCGTCATACAAAACAGGTAGCTGGTCAAAGC
TGGCCTGCAGGTCTTAGTTTGTTGGTTTATCCATCCATCTTTCCTTCCCA
TCTCTTTTCCTTTCTCCCTCTTTCTCTCCCTCCCTCCCTCGCCTCTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTACATACATACTTACTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCCAGTCTTAGAAGGTGGAGACAGCGGG
AGGGCATGAAATGAATAGCACAGTCTTTCTTTATGACTGCAGATATAGTG
ACAGCTTCTGAATTAGTGACAAGGTGTTACAAGGTTTTCTAGTAGAAATG
CTGATAAAGTGAGTGTTGTGTCACTACACAGCCTATTTGGAGACTTTCAA
GAAATTCTTTTTACTCTCCGAACTGTAGCTCTATGGCAAGAAGTTGAGTC
AATCCTGGGAAGAAGTAGGCAGTGATGAGAACACAGAACCCTTTCTAGGG
TTAATTTTAGGAAGCCCGTTTACAGGAACTGAGGTTTGGATTTACAAGAA
TGACAGTTTAATCAGGAGGGTTCTGCTGACACAGGAAGTATCACCATGGA
CACCCTCAGCAGTCTTAGTAAAACTTCTGTTAGTGCTGCAAATGAGTATG
GTTTCTAGGCAGCCTTTGTTCTGATGGGTAAATTCATGTAAAAAAGTTTT
GAGAAATTTCCATTAAGTCTTCTGGTGCCACN

NTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGCTAGATCATAGCTG
TGTTGCTAGTGAGAGCCTAAATCAGTGGTTCTCAACCCGTGGGTCAGGAC
CCCTCCTGAATGATCTGTTTACTGGGGTCACCTAAGACCCAGCAGAAGCC
ACAAATATTTACATTATGATTCATAACAGCAGCAAAATTACAGTTATGAA
GTAGCAATAAAAATAACTATATGGTTGAAGGTCACCACAACATGAAGAAC
TGTATTAAAGGGTCACATTAGGAAGGTTGAGACCCACTGCCTTAAACGGT
CCATCCTCTCTGAAGCTAGTTTGGTACTCTCTTAAAAACTAAGCATGTAC
CCTATCCATGATACGACTGCAATCGTATTTCTTGCCTTTTATCTCAAGTA
AAGAAAGTTCATAACCTACACAACCCTCCGCCCACCAGTGTTAATAGCCA
CAGGACATCCTGCTGGCTGGAAACAGAGGATCGCAAAGTCAAATACTGTA
TGACTCTACCTACCTAATTATAAACAGCCTACACATGGCAACATGGCCGA
GATGGAGAAATGGAGCGATTGCCATTGGTTAGGATTGGTAGGTAGAGGTG
TGAATTAAAGACTGGCAGGAAAGCGAGCATCTTGGGGAAGAAATGGCTGT
GACTCTTTGTTTCAGTTCTAACAAGTCTCTCGGGGTTAGAAGAGCAAACG
TTGATTGTATCAATGTCAACTTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_l23.b1 MSMg01no530_l23.b1 CHROMAT_FILE:
MSMg01no530_l23.b1 PHD_FILE: MSMg01no530_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:10 2005
         (412 letters)



>mm_chr2_104758355_104759166
          Length = 812

 Score =  781 bits (404), Expect = 0.0
 Identities = 410/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttccttccttccttccttccttccttcccagtcttagaaggtggagacagcgggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttccttccttccttccttccttccttcccagtcttagaaggtggagacagcgggaggg 260

                                                                       
Query: 61  catgaaatgaatagcacagtctttctttatgactgcagatatagtgacagcttctgaatt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 catgaaatgaatagcacagtctttctttaagactgcagatatagtgacagcttctgaatt 320

                                                                       
Query: 121 agtgacaaggtgttacaaggttttctagtagaaatgctgataaagtgagtgttgtgtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgacaaggtgttacaaggttttctagtagaaatgctgataaagtgagtgttgtgtcac 380

                                                                       
Query: 181 tacacagcctatttggagactttcaagaaattctttttactctccgaactgtagctctat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagagcctatttggagactttcaagaaattctttttactctccgaactgtagctctat 440

                                                                       
Query: 241 ggcaagaagttgagtcaatcctgggaagaagtaggcagtgatgagaacacagaacccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaagaagttgagtcaatcctgggaagaagtaggcagtgatgagaacacagaacccttt 500

                                                                       
Query: 301 ctagggttaattttaggaagcccgtttacaggaactgaggtttggatttacaagaatgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagggttaattttaggaagcccgtttacaggaactgaggtttggatttacaagaatgac 560

                                                               
Query: 361 agtttaatcaggagggttctgctgacacaggaagtatcaccatggacaccct 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttaatcaggagggttctgctgacacaggaagtatcaccatggacaccct 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |