BAC Information

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BAC

Clone NameMSMg01-531E07
Chromosome2 (Build37)
Map Location 108,752,739 - 108,917,187
singlet/doubletdoublet
Overlap geneLOC623031
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423
Downstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531E07.T7 (MSMg01no531_e07.b1)MSMg01-531E07.TJ (MSMg01no531_e07.g1)
ACCAG599711AG599712
length728728
length of high quality
(start - end)
452 (74 - 525)386 (203 - 588)
definitionCHROMAT_FILE: MSMg01no531_e07.b1 PHD_FILE: MSMg01no531_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:50 2005CHROMAT_FILE: MSMg01no531_e07.g1 PHD_FILE: MSMg01no531_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,752,739 - 108,753,190)(108,916,804 - 108,917,187)
sequence
CCTCATATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGTTATTTCTGAAAATGAACTAAGATCACCTTATCT
AGAAAGAGTGTAAAGCAGAGGACACATATAACCACGTAAACAGCATCTGT
ATTTATTTATCATTTTAAGGGGATATGAAAAACGTGTAGAATGTCCTTCT
GCCTCTTTTGGAGGGAGAGCAGTGATTAAAAATTAAGCTCCTTTTATCCA
GGACACATTATTGTATTACAGTTTCCACAGGGATTGAGAATTCATGTTCT
ATGACAAAATATAGGGGATAAACACTAATATTTATATACATCTAAGGCCC
CCAAGGCATTTCTGTGAAGTGCAAAATGAAAGAAACATAATATTGCATTT
TATAATAATTTGTCCTTTCTCTGACCTCTGATGAAGCTTTTTACCATACT
GTCTGCAAACTGTTCCCTAGTTGTTAAGTTTGTCTCTTTTATCCTCAGAC
TCCCTTAAAATATCCAAGAGCAAAAACCAAATGACTAAATCTTATCTCCC
ACTTCTTACCCTCTATACCCTCCTGAATGCAGGACATAAAATTAATTGTG
AAGGTGCTTTTCTGATCCCATTGTCAGCTACTTAGAAAGACTTCCCTTCA
TGGAAAAGACTTGATAGTCACGAAATGTAATTGTCCAATATCCACTGTTA
TTTTTCCTGTTTTCTTCATCTTTTGCTA
CCCTTCTCTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCAAAAGATTCTAT
ATCCCCTCAAGGAGAAAAATTACATTTCTAAAATAATTTGTATAAGTTTG
CACATATAGTGTATATAACTTAGAAAATTGTCCCAAATGAAGAGATAATA
AAATGTTTTAAAGGGAGAAAAAAATGTGGGTAATAAATCCACATGGAGGG
TTTAAGTAAGTGCATGACATAAAGAAAATAAAGAGACCTGAAAATTAAAA
AGCATAAACTGAAACATCTTGAATTGAAATAGCACTCAGGTCCACAAACT
TAAGAACTCAGTAGATGTGAGAACAGTTGAGACATAATAATGTGGTGTGG
GAAAGGTGTGGATTCTCGAAGGGAAGCACCTGAAAGGAAGCGCACAGTGA
CAAAAGGAAAGCTGTGAGAGACATATGGGTGTGGAAAAGACAAGACATGG
GAGTGTGTGAAGACGTGGGTGTATAAAAGATATGAGTGTGCAAAAGACAA
GACATATGAATGTGTGAAAGACAAGACATGAATTACAAAAGATAAGACAT
ATGAGTATGTAAAAGACAAGACATGTGAGTGTGTAAAAGACATGAGTGTG
TAAAAGACATGAGTGTGTAAAAGACATGAGTGTGTAATATACAAGACATA
TGAATGTGTAAAAGACAAGACATATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_e07.b1 MSMg01no531_e07.b1 CHROMAT_FILE:
MSMg01no531_e07.b1 PHD_FILE: MSMg01no531_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:50 2005
         (452 letters)



>mm_chr2_108752539_108753390
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaatgaactaagatcaccttatctagaaagagtgtaaagcagaggacacatataacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaatgaactaagatcaccttatctagaaagagtgtaaagcagaggacacatataacc 260

                                                                       
Query: 61  acgtaaacagcatctgtatttatttatcattttaaggggatatgaaaaacgtgtagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtaaacagcatctgtatttatttatcattttaaggggatatgaaaaacgtgtagaatg 320

                                                                       
Query: 121 tccttctgcctcttttggagggagagcagtgattaaaaattaagctccttttatccagga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tccttctgcctcttttggagggagagcagtgattaaaatttaagctccttttatccagga 380

                                                                       
Query: 181 cacattattgtattacagtttccacagggattgagaattcatgttctatgacaaaatata 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacattattatattacagtttccacagggattgagaattcatgttctatgacaaaatata 440

                                                                       
Query: 241 ggggataaacactaatatttatatacatctaaggcccccaaggcatttctgtgaagtgca 300
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gggaataaacactaatatttatatacatccaaggcccccaaggcatttctgtgaagtgca 500

                                                                       
Query: 301 aaatgaaagaaacataatattgcattttataataatttgtcctttctctgacctctgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgaaagaaacataatattgcattttataataatttgtcctttctctgacctctgatg 560

                                                                       
Query: 361 aagctttttaccatactgtctgcaaactgttccctagttgttaagtttgtctcttttatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctttttaccatactgtctgcaaactgttccctagttgttaagtttgtctcttttatc 620

                                           
Query: 421 ctcagactcccttaaaatatccaagagcaaaa 452
           |||||||||||||||||||||||||| |||||
Sbjct: 621 ctcagactcccttaaaatatccaagaacaaaa 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no531_e07.g1 MSMg01no531_e07.g1 CHROMAT_FILE:
MSMg01no531_e07.g1 PHD_FILE: MSMg01no531_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:51 2005
         (386 letters)



>mm_chr2_108916604_108917387
          Length = 784

 Score =  704 bits (364), Expect = 0.0
 Identities = 380/386 (98%), Gaps = 2/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttttaaagggagaaaaaaatgtgggtaataaatccacatggagggtttaagtaagtg 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgttttaaagggag--aaaaatgtgggtaataaatccacatggagggtttaagtaagtg 527

                                                                       
Query: 61  catgacataaagaaaataaagagacctgaaaattaaaaagcataaactgaaacatcttga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 526 catgacataaagaaaataaagagacctgaaaattaaaaagcataaactgaaacaccttga 467

                                                                       
Query: 121 attgaaatagcactcaggtccacaaacttaagaactcagtagatgtgagaacagttgaga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgaaatagcactcaggttcacaaacttaagaactcagtagatgtgagaacagttgaga 407

                                                                       
Query: 181 cataataatgtggtgtgggaaaggtgtggattctcgaagggaagcacctgaaaggaagcg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cataataatgtggtgtgggaagggtgtggattctcgaagggaagcacctgaaaggaagcg 347

                                                                       
Query: 241 cacagtgacaaaaggaaagctgtgagagacatatgggtgtggaaaagacaagacatggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacagtgacaaaaggaaagctgtgagagacatatgggtgtggaaaagacaagacatggga 287

                                                                       
Query: 301 gtgtgtgaagacgtgggtgtataaaagatatgagtgtgcaaaagacaagacatatgaatg 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtgtgtgaagacatgggtgtataaaagatatgagtgtgcaaaagacaagacatatgaatg 227

                                     
Query: 361 tgtgaaagacaagacatgaattacaa 386
           ||||||||||||||||||||||||||
Sbjct: 226 tgtgaaagacaagacatgaattacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 784
Length adjustment: 9
Effective length of query: 377
Effective length of database: 775
Effective search space:   292175
Effective search space used:   292175
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)