Query= MSMg01no531_f06.b1 MSMg01no531_f06.b1 CHROMAT_FILE:
MSMg01no531_f06.b1 PHD_FILE: MSMg01no531_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(635 letters)
>mm_chr2_113686975_113688009
Length = 1035
Score = 868 bits (449), Expect = 0.0
Identities = 477/491 (97%), Gaps = 9/491 (1%)
Strand = Plus / Minus
Query: 5 gaattctctcctgttcgtggaccttggagatcaaactcaggttgtcaggcttagcaacaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattctctcctgtttgtggaccttggagatcaaactcaggttgtcaggcttagcaacaa 427
Query: 65 acgctccactcgt----ctgtcactggcccaataagctgtttttttgatttagtggtaga 120
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acgcttcactcgtctaactgtcactggcccaataagctgtttttttgatttagtggtaga 367
Query: 121 ggtcaagagatttgggttgagatcttatctctaagactttgtgaaaaactgaataagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtcaagagatttgggttgagatcttatctctaagactttgtgaaaaactgaataagtca 307
Query: 181 ttttaacgtaagtaggagctgggtggtagcacactcctttaatcccagcacttgggaggg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttttaaagtaagtaggagctgggtggtagcacactcctttaatcccagcacttgggaggg 247
Query: 241 caaaagccagcctggtctagggagtgagtaccaggccaaggctatacagagaaatcctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 caaaagccagcctggtctagggagtgagtaccaggccaaggctatacagagaaatcctgt 187
Query: 301 ctcaaacaaaacaaaacaaaacaaaggtatgtgagtaatttattactagcactttgtagt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctc-----aaacaaaacaaaacaaaggtatgtgagtaatttattactagcactttgtagt 132
Query: 361 atttgaagacaaaaagtttccataattttgtattatgtattcaggctggccttgaactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atttgaagacaaaaagtttccataattttgtattatgtattcaggctggccttgaactca 72
Query: 421 ctaactgatgctggctagagctcttgatcctccaatttccccctctctggtattgcgatt 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 71 ctaactgatgctggctaaagctcttgatcctccaatttccccctctctggtattgtgatt 12
Query: 481 agaaaggtgta 491
|||||||||||
Sbjct: 11 agaaaggtgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_f06.g1 MSMg01no531_f06.g1 CHROMAT_FILE:
MSMg01no531_f06.g1 PHD_FILE: MSMg01no531_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(670 letters)
>mm_chr2_113492975_113494049
Length = 1075
Score = 1236 bits (639), Expect = 0.0
Identities = 664/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Plus
Query: 1 ctcagtgtgtggttgctctttcctctctgggactgggagattgtggacctgtgctgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagtgtgtggttgctctttcctctctgggactgggagattgtggacctgtgctgtttt 260
Query: 61 gtacatccctcatataggtgccctgaccatgcttctcctctcaagcatcttctccagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacatccctcatataggtgccctgaccatgcttctcctctcaagcatcttctccagcct 320
Query: 121 tccagccgccctccataattcctcagtgtgaggttgctcttccctctctgggactgggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagccgccctccataattcctcagtgtgaggttgctcttccctctctgggactgggag 380
Query: 181 actgtgggcctgtgctgttttgtacatctctcatataggtgcc-----gtccaccaccaa 235
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 381 actgtgggcctgtgctgttttgtacatctctcacataggtgccgtccagtccaccaccaa 440
Query: 236 gcaatgataagtgccttagcggttgctaaaacagccaatccccaagacaatacctttgca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaatgataagtgccttagcggttgctaaaacagccaatccccaagacaatacctttgca 500
Query: 296 cactcgattcaaaatgccatgcacacagcgaccctgtccgggaggaaatggattgagcca 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 cactcgattcaaaatgccatgcacacagcgaccctgtccgggaagaaatggattgagcca 560
Query: 356 gtggtgcaccgctgggatgtgcagaaatcagacatatccaccatgctgctgctatcattg 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggtgcaccactgggatgtgcagaaatcagacatatccaccatgctgctgctatcattg 620
Query: 416 gtatactgtcattaagttgctcagaccagataactccactgttctcataatgatctggta 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatactgtcattaagttgctcagaccagataactccactgttctcataatgatctggta 680
Query: 476 agaacatttcctcttgctaccagctcctctaatagcagagtctgagccacaacacacatg 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 agaacatttcctcttgctaccagctcctctaatagcagagtctgagccacagcacacatg 740
Query: 536 ctgcgggctagagacaagggcacagtagatataggcagcaggctgggatgacgggggctg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcgggctagagacaagggcacagtagatataggcagcaggctgggatgacgggggctg 800
Query: 596 ccgagttgctgagtttcctctgcagaccttaggctcctactcacccaattccacatctca 655
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccgaattgctgagtttcctctgcagaccttaggctcctactcacccaattccacatctca 860
Query: 656 gggacgtgatctttc 670
|||| ||||||||||
Sbjct: 861 gggatgtgatctttc 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1075
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1065
Effective search space: 702900
Effective search space used: 702900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
