BAC Information

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BAC

Clone NameMSMg01-531I09
Chromosome2 (Build37)
Map Location 69,242,538 - 69,242,935
singlet/doubletsinglet
Overlap genenone
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
Downstream geneLrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531I09.T7 (MSMg01no531_i09.b1)MSMg01-531I09.TJ (MSMg01no531_i09.g1)
ACCAG599903AG599904
length758747
length of high quality
(start - end)
453 (76 - 528)398 (116 - 513)
definitionCHROMAT_FILE: MSMg01no531_i09.b1 PHD_FILE: MSMg01no531_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:10 2005CHROMAT_FILE: MSMg01no531_i09.g1 PHD_FILE: MSMg01no531_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAACTTTTGCATCTCAAATGGCCAAGAAACACCTAAAGAA
ATGTTTAACATCCTTAGTCATCAAGGAAATGCAAATCAAAATGACCCTGA
GATTCTACCTCATACCAGTCAGAATGGCTAAGATTAAAAACTCAGGGGAC
AGCAGATGCTGGCAAGGATGTGTAGAAAGACAAACATTCCCTCCATTGCC
GGTGGGATTGCAAGCTGGTAAAAACACTTTGGAAAACAATCTGGAGGTTC
CTCAGATAATTGGGTATAGCTCTACCTGAAGAGCCAGCTATATCACTACT
GGACATATACCCAAAAGATGCTCCAACATATAACAAGAACACATGCTCTA
CTATGTTTATAGCAACTCTCTTTATAATAGCCAGAAGCTGGAAACAACCC
AGATGTCCCTTGACAGATTAATGGATACAGAAAATGTAGTACTTTTACAC
AGAGGAGTACTACTCAGCTATGAAAACAATGACTTCATGAAATTTGCATG
CAAATGGATGGAACTAGAATATATCACCCTGAATGAGATAACCCAGACAC
AAAAGCACACACATGGTATGTATTCCCTGATAAGCGGATATCAGCCCCAT
ATTTCAGAATACCCACATTTATATTCCCACAACCTATATTGGTGCTTCAT
AATGATGATCCATTTTGTGCACGCTTTTTTTTTACCTTTTTTCGGCCTTT
CTTTTATT
GCCTTCTTTTTATTTGAGGATTGTTGGCCGCCTGTTTCTCTACXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGGAAATCCATGGACTGTACTC
CGGGTAGAGCGTGGCTGTTTGAAAAACTGAATGGGAATCCTTCTGATGAT
GGAAGCAGGAGCTGGAGCCCTAAAGTGTTCTAGAACTGGAGCTAGTTGGC
AAAGCAATTAGAAGGCAGTGACCTCCCCTTCTTCAGTAGTGTCAGGGCAG
AAGAGTGTGATATCATGAATGTGTTCCATGAAATGTCCCTGAGACAGATG
CTGGGTTATTCCTATCAAATCATTCAGATTTTTCCTGGCAGCAGCAATTT
CCTGGCAGTTTCTTTGACTGCAGTGTAGTAGTGATAGAGGCTCTGAACTC
ATCTTGTATCTTTCCATTCTTCCAGTGCCTAGGTTAGCCCTAGCTACAGG
GACCACGATAGACTGCCAATATTTTTTATTCAAAACAAAGAGCAAAACAA
AACAGCAATAAGAGACTTGGTATTTGTGGCACCCCAATCTTTGGTGTCTT
TCTTTTTGTTTGATCTTAAAAGCTAGAAGATTTTAACTCTTGGCTTTGGG
TGATGAGAGGAGAGTGAAGGTCATTGTTGAGGTTAACAAAGGGCACTCAC
AAACAAATCCCCTAAGCAAGTAACTGTAAGCAAACATGATCCGAAGATGA
CAAAGATAATAGGACAAGGGAAAGGAAATTCACAAATGTATTTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_i09.g1 MSMg01no531_i09.g1 CHROMAT_FILE:
MSMg01no531_i09.g1 PHD_FILE: MSMg01no531_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:10 2005
         (398 letters)



>mm_chr2_69242338_69243135
          Length = 798

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgaaaaactgaatgggaatccttctgatgatggaagcaggagctggagccctaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtttgaaaaactgaatgggaatccttctgatgatggaagcaggagctggagccctaaag 539

                                                                       
Query: 61  tgttctagaactggagctagttggcaaagcaattagaaggcagtgacctccccttcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgttctagaactggagctagttggcaaagcaattagaaggcagtgacctccccttcttca 479

                                                                       
Query: 121 gtagtgtcagggcagaagagtgtgatatcatgaatgtgttccatgaaatgtccctgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtagtgtcagggcagaagagtgtgatatcatgaatgtgttccatgaaatgtccctgagac 419

                                                                       
Query: 181 agatgctgggttattcctatcaaatcattcagatttttcctggcagcagcaatttcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agatgctgggttattcctatcaaatcattcagatttttcctggcagcagcaatttcctgg 359

                                                                       
Query: 241 cagtttctttgactgcagtgtagtagtgatagaggctctgaactcatcttgtatctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagtttctttgactgcagtgtagtagtgatagaggctctgaactcatcttgtatctttcc 299

                                                                       
Query: 301 attcttccagtgcctaggttagccctagctacagggaccacgatagactgccaatatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 attcttccagtgcctaggttagccctagctacagggaccacgatagactgccaatatttt 239

                                                 
Query: 361 ttattcaaaacaaagagcaaaacaaaacagcaataaga 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttattcaaaacaaagagcaaaacaaaacagcaataaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)