CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCATCTGCTGAATACTTCTAGCAAGTTCTTGGTGAGAGTGTC
ACTCAATTTGGCACCTACTGATGCAGAACATACACACAGGCCCTATGACC
CAAAAATGTCACTCTGGAGCACATACCTACAGAACTGTATTCATGTATGT
ATAATAGAATGACTACAGAACTGTTCATAATATGCCCCAACTGGAAACCA
TCCAACTGCCCAGAAACAATAGTAAAGGGATATAAATCATGGTGTATTCA
CAAGCTGGGATAATCTGCAATGATGAGCATAGACAATGTATAATTATATA
TAAACTACAGGATCACCCTCATAAGCGTTCATATTTAAAGCAAAATCAGA
ATGCTTGAGCCCTGCACTTGAGACTAACCTGAGTAAGAAAATAAAATAAT
AAATAGGGTAAAATAGAAGGCAGGTAAGTGAAGCTGTGCGAAGTGACAGT
TTTTTTTTTTTTTTTTTCTTTTTGGTTTTTTTTTTTTTCCATTTTTTATT
AGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCCATA
GCCACCCACCCCCTCTCCCCTACCCAACCACTCCCCTTTTATGGCCCTGG
CGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTC
TTTCCAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAG

ACCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCAAAGAAGCTGTTTGGAACA
AAGACGAGCGGGTAGTTGCTGAGCGGCGGACACACTTAGAGGTAAGAGAG
CAAGCTTTTCACCTCCCTGTGTAGAAAAATCCACCATCTGAATGATTGGC
AAGAGCAGCTCCTGTCAGGCCCTTTGTCTTTATTGGCAACTGTGAAGAGC
TGCTTCGCTAATGCAGGAGATGGCAGCGGGGTGGTGGTATGACTTGATTT
CAAATCAGGTCCTTAGCCCCTCTGGTTTGGCTAGCATCTTTCTGATTTTG
AAGAAGACACCCTTGGCCCGAGAGTTAGGACACAGTGTGTGAGCGAGCGT
TATATTCTCCCCTTCAGCCAGATGGTATGTAATGTATGATGAGAGCACAG
AGCTTGCTGAATACAACTTGGAATTATTTAACCAAACTTACAGTATGTCG
ACATTGCCGCTTTTTTCAGAGCTTTGGGAGGGAGAATTTTCTGACCTATT
TTAGTTTTATTTCAGAGTCTTTGTTATTTATTTTAGCTTTATTCTGCCCA
GCTAGCTACTCCTAGATTCCAGTTTAATTACATCCTTGTTTTTTGACACT
GTCTTCGCCCCCCCACCCCATAGCCTGATCTGTTGTTCCACCACGCTGGC
GGGTTTTTCTTTTTTAATACCGGTTTTATATATAATTTTCGGCTAAACAA
CCAGATTTGCTTTCTTACCCATAATG

Query= MSMg01no531_k12.b1 MSMg01no531_k12.b1 CHROMAT_FILE:
MSMg01no531_k12.b1 PHD_FILE: MSMg01no531_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:21 2005
         (571 letters)



>mm_chr2_142348065_142349035
          Length = 971

 Score =  849 bits (439), Expect = 0.0
 Identities = 451/455 (99%), Gaps = 1/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcatctgctgaa-tacttctagcaagttcttggtgagagtgtcactcaatt 62
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctttcatctgctgaaatacttctagcaagttcttggtgagagtgtcactcaatt 262

                                                                       
Query: 63  tggcacctactgatgcagaacatacacacaggccctatgacccaaaaatgtcactctgga 122
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 263 tggcacctactgatgcagaacatacacacgggcgctatgacccaaaaatgtcactctgga 322

                                                                       
Query: 123 gcacatacctacagaactgtattcatgtatgtataatagaatgactacagaactgttcat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcacatacctacagaactgtattcatgtatgtataatagaatgactacagaactgttcat 382

                                                                       
Query: 183 aatatgccccaactggaaaccatccaactgcccagaaacaatagtaaagggatataaatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatatgccccaactggaaaccatccaactgcccagaaacaatagtaaagggatataaatc 442

                                                                       
Query: 243 atggtgtattcacaagctgggataatctgcaatgatgagcatagacaatgtataattata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atggtgtattcacaagctgggataatctgcaatgatgagcatagacaatgtataattata 502

                                                                       
Query: 303 tataaactacaggatcaccctcataagcgttcatatttaaagcaaaatcagaatgcttga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tataaactacaggatcaccctcataagcgttcatatttaaagcaaaatcagaatgcttga 562

                                                                       
Query: 363 gccctgcacttgagactaacctgagtaagaaaataaaataataaatagggtaaaatagaa 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 gccctgcacttgagactaacctgagtaagaaaataaaataataaatagggtaaaatcgaa 622

                                              
Query: 423 ggcaggtaagtgaagctgtgcgaagtgacagtttt 457
           |||||||||||||||||||||||||||||||||||
Sbjct: 623 ggcaggtaagtgaagctgtgcgaagtgacagtttt 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)