Query= MSMg01no531_k22.b1 MSMg01no531_k22.b1 CHROMAT_FILE:
MSMg01no531_k22.b1 PHD_FILE: MSMg01no531_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:23 2005
(667 letters)
>mm_chr2_74099997_74101063
Length = 1067
Score = 1116 bits (577), Expect = 0.0
Identities = 652/695 (93%), Gaps = 34/695 (4%)
Strand = Plus / Plus
Query: 5 gaattcactctgtagaccaggctagccttgaactcagagatctgcctgcctctgcttccc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 175 gaattcactctgtagaccaggctagccttgaactcagagatctgcctgcccctgcttccc 234
Query: 65 aagtgctgagattaaagatatgcgccaccactgcccagttttattatggatt-------- 116
||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 235 aagtgctgagattaaagatatgcaccaccactgcccggttttattatggattttgttgtt 294
Query: 117 -ttgttgttgttgttgttgtttaatacataaaacttttcaaaggggatattttaaggcat 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gttgttgttgttgttgttgtttaatacataaaacttttcaaaggggatattttaaggcat 354
Query: 176 gagggttttttgtggtttttttgttttgtttttgtttgtttgttttttggcctatctttt 235
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gagggttttttgtgg-ttttttgttttgtttttgtttgtttgttttttggcctatctttt 413
Query: 236 taaacttcaggtcctttaatgcatattaaactagcaatgctttccttcctcaacaatcat 295
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 414 taaacttcagatcctttaatgcatattaaactagcaatgcttttcttcctcaacaatcat 473
Query: 296 ggctggcttcatagtctctataaatatagcttggggaatcctattatggggggaacaaca 355
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 474 ggctggcttcatagtctctataaatatagcttggggaatcctgttatggggggagcaaca 533
Query: 356 ttttggatataattttatactcagcttctaaacaatgtttgtaaatcctttcttggattt 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 534 ttttggatataattttatactcagcttctaaacaatg-ttgtaaatcctttcttggattt 592
Query: 416 ttttttttt------ttttttg---------gtt----ttttgttttgttttgt----tt 452
||||||||| ||||||| ||| |||||||||||||||| ||
Sbjct: 593 tttttttttttttggttttttgttttgttttgtttttgttttgttttgttttgttttgtt 652
Query: 453 tggttagtgagagagtcagaaaattgcgattcattccactaagtaaagagcacttcaggg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tggttagtgagagagtcagaaaattgcgattcattccactaagtaaagagcacttcaggg 712
Query: 513 atgagaaatgaggtacagacaggtatagtttggtagatagatggtaaacattacttcttc 572
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 713 atgagaaatgaggtacagacagaaatagtttggtagatagatggtaaacattacttcttc 772
Query: 573 cataattggccccaacatacactatctttgcaaatagctatctcatgttgcaccggtaaa 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cataattggccccaacatacactatctttgcaaatagctatctcatgttgcaccggtaaa 832
Query: 633 ttttacgtgctactctgttggagccaagtgtacca 667
|||||||||||||||||||||||||||||||||||
Sbjct: 833 ttttacgtgctactctgttggagccaagtgtacca 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_k22.g1 MSMg01no531_k22.g1 CHROMAT_FILE:
MSMg01no531_k22.g1 PHD_FILE: MSMg01no531_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:23 2005
(625 letters)
>mm_chr2_74216920_74217947
Length = 1028
Score = 1087 bits (562), Expect = 0.0
Identities = 610/632 (96%), Gaps = 13/632 (2%)
Strand = Plus / Minus
Query: 1 ctgccttggttccacccccaacccccccaccccaccccagtgatggatagtgatcagtat 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 829 ctgccttggttccaccccca--ccccccac----ccccagtgatggatagtgatcagtat 776
Query: 61 tgtaagtcaaataaactctttcttccccaagttacttttggttaatgctttatcatagca 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgtaagccaaataaactctttcttccccaagttacttttggttaatgctttatcatagca 716
Query: 121 acagaaagcaaacaaactaggtcagttaataactatgtgggcccatagaataattcattt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 715 acagaaagcaaacaaactaggtcagttaataactatgtgggcccatagaacaattcattt 656
Query: 181 caatacaaacaaaactcttctctgctttctttatctctctctcttttacattaaaatttg 240
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 655 caatgcaaacaaaactcttctctgctttctttatctctctctcctttacattaaaatttg 596
Query: 241 tacagaaaagggaattctgtaaatatagtatgcttgttttctttgaaagaaatttgtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tacagaaaagggaattctgtaaatatagtatgcttgttttctttgaaagaaatttgtttc 536
Query: 301 tcatttttaatgaagattaaaaaatatgagaaatttacttaagtataattatataactaa 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 535 tcatttttaatgaagattaaaaaatacgagaaatttacttaagtataattatataactag 476
Query: 361 gtttagtccaatgatattgtgacttatttaacaaataatatacattgctagaatatatca 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gttaagtccaatgatattgtgacttatttaacaaataatatacattgctagaatatatca 416
Query: 421 gaatgtgctttgttatagaataattagttttcaacaatata---atatttgcatgtatta 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 415 gaatgtgctttgttatagaataattagttttcaacaatatattaatatttgcatgtatta 356
Query: 478 tattagtatgttatatataatatatgtatatagcaacatgtatggatctgtgtatctata 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 tattagtatgttatatataatatatgtatatagcaacatgtatggttctgtgtatctata 296
Query: 538 tacgtatatata----gcatatagtatatatatgtacatagtatatgcatatagaaagat 593
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tacatatatatatatagcatatagtatatatatgtacatagtatatgcatatagaaagat 236
Query: 594 aaaatatgcaaacaatatgtccatatttaaaa 625
||||||||||||||||||||||||||||||||
Sbjct: 235 aaaatatgcaaacaatatgtccatatttaaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1028
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1018
Effective search space: 626070
Effective search space used: 626070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
