BAC Information

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BAC

Clone NameMSMg01-532C11
Chromosome2 (Build37)
Map Location 151,440,882 - 151,441,424
singlet/doubletsinglet
Overlap geneSnph
Upstream geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2
Downstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C11.T7 (MSMg01no532_c11.b1)MSMg01-532C11.TJ (MSMg01no532_c11.g1)
ACCAG600381AG600382
length739753
length of high quality
(start - end)
578 (52 - 629)521 (80 - 600)
definitionCHROMAT_FILE: MSMg01no532_c11.b1 PHD_FILE: MSMg01no532_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:00 2005CHROMAT_FILE: MSMg01no532_c11.g1 PHD_FILE: MSMg01no532_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGACATTCACCGCTGTACAGAGAAACCCTGTCTCGAA
AAAAACAAAAAAATAAATAAATTAGTTAATTTATAATTAAAAAAAAATTG
ACCCAGTCCAAAGGACAAAGGAAGCCTGTTGTACCATGGGACCTTCCTGG
TATGTTACCCAGGGCTTTGGTCTGTAAATGTGTCCTCTAAGCAACTGCGT
GGCTCCTGGCGGACATCATCACTAAACACATTTTCACAGTTGAGCTTCAC
TTGGCAGGGAGGGGCAGCTGAGGTTCCTATCCAGTCCTTTGCTGAGAGGC
ACATTCCTAGCTCAGTCTTAACCCAGGACAGTTCACTTTCTCTTCCCACC
AAACCAGAGTCCCTGTGACAGGCTCTTGTGTGCTCTTAGGAAAGGCAGGT
TAGAGGGATATACCCAGAGCCCAGCGCCAACAGAACCAGTGAAGGGCGGA
CTGTTTTACAGAGTGGGGATCGTGTGCACCAGCTGCAGGGAAGAAGAGAG
GTTTTGCCTGCTGCAGTTAGAGGTGCATTCTGTTTCCTCTGCAGCCCCAG
TGGCCTTGTCCAACAGGCTTTCCCTTTTAGCCCCATCCAGCATCACCAAC
ATCTGGCAATAGCCAAAAAAACACTATCGGGCTGGCTTAGGCCACTGTGC
ACCACAGTCCTCTGCCACAAGGGAGGTTTCGAAACCTAA
TGGATGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGCCTAAACA
GAGAAACCCTGGTCTTGAAAAACAAAACAAAACAAAACAAAACAAAACAA
AACAAAACAAACAAACAAACAAGAAAGACTACTTATAGTCTCATAGCCAA
CCCAGGCTATTTAACACTGAGAAAATGTATTTGAGAATATAGTTCTCAGA
TAGTATACAAGCAAAATCAGGACATAACATATGGAGTTATAAGTCTTTTA
TGTTAGAATAAATGACAGAGTGTTCTATTTAATTGTCCAAGATGATGGAC
GGGATGTTAGGTGTATCTTATAATTTAAAAAAATGGTCAACCCTATAGGA
GGAACAACAATATGAACTAACCAGGACCCACAGAGCTGTGTCTCTAGCTG
CATATGTAGCAGAGGATGGCCTAGTTGGCCATCAGTGAGAGGAGAGGCCC
TTGGTACTGCAAAGATCATTATGCCCCAATACAGAGGATTGCCAGGGCCA
GAAAGTGGGAGTGGGTGGGTTGGGGAACAGGGGGAAGAGGGGAATGGAGG
TNTCTTTTTTTTTTTCCCGTTTTTGTGGTTGTTTGGGATTGGCTGTGTTT
TTTTTTTTTGTGTGCTATTTTGTCCTCTTTTCTGCTTTTTCTGTTTTTCC
GGTGGATTTCTGTCTGTGCTTTTGTTCTATTTCTTTCCCCTCTTTTTTCT
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c11.b1 MSMg01no532_c11.b1 CHROMAT_FILE:
MSMg01no532_c11.b1 PHD_FILE: MSMg01no532_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:00 2005
         (578 letters)



>mm_chr2_151440449_151441424
          Length = 976

 Score =  936 bits (484), Expect = 0.0
 Identities = 532/556 (95%), Gaps = 18/556 (3%)
 Strand = Plus / Minus

                                                                       
Query: 28  tacagagaaaccctgtctcgaaaaaaa--caaaaaaataaataaattagttaatttataa 85
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||
Sbjct: 976 tacagagaaaccctgtctcgaaaaaaaaccaaaaaaataaataaattagttaattaaaaa 917

                                                                       
Query: 86  tt---aaaaaaaaattgacccagtccaaaggacaaaggaagcctgttgtaccatgggacc 142
           ||   ||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||
Sbjct: 916 ttaaaaaaaaaaaactgacccagtcc-aagg--aaaggaagcctgttgtaccatgggacc 860

                                                                       
Query: 143 ttcctggtatgttacccagggctttggtctgtaaatgtgtcctctaagcaactgcgtggc 202
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 859 ttcctggtatgttacccagggctttggtctgtaaatgtgtcctctaagcaacggcgtggc 800

                                                                       
Query: 203 tcctggcggacatcatcactaaacacattttcacagttgagcttcacttggcagggaggg 262
           ||||||||| |||||||||||||||||         ||||||||||||||||||||||||
Sbjct: 799 tcctggcgggcatcatcactaaacaca---------ttgagcttcacttggcagggaggg 749

                                                                       
Query: 263 gcagctgaggttcctatccagtcctttgctgagaggcacattcctagctcagtcttaacc 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gcagctgaggttcctatccagtcctttgctgagaggcacattcctagctcagtcttaacc 689

                                                                       
Query: 323 caggacagttcactttctcttcccaccaaaccagagtccctgtgacaggctcttgtgtgc 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caggacagttcactttctcttcccaccaaaccagagtccctgtgacaggctcttgtgtgc 629

                                                                       
Query: 383 tcttaggaaaggcaggttagagggatatacccagagcccagcgccaacagaaccagtgaa 442
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 628 tcttaggaaaggcaggttagagggatata-ccagagcccagcgccaacagaaccagtgaa 570

                                                                       
Query: 443 gggcggactgttttacagagtggggatcgtgtgcaccagctgcagggaagaagagaggtt 502
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggcggactgttttacagagtggagatcgtgtgcaccagctgcagggaagaagagaggtt 510

                                                                       
Query: 503 ttgcctgctgcagttagaggtgcattctgtttcctctgcagccccagtggccttgtccaa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttgcctgctgcagttagaggtgcattctgtttcctctgcagccccagtggccttgtccaa 450

                           
Query: 563 caggctttccctttta 578
           ||||||||||||||||
Sbjct: 449 caggctttccctttta 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 976
Length adjustment: 10
Effective length of query: 568
Effective length of database: 966
Effective search space:   548688
Effective search space used:   548688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)