Query= MSMg01no532_k11.b1 MSMg01no532_k11.b1 CHROMAT_FILE:
MSMg01no532_k11.b1 PHD_FILE: MSMg01no532_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:37 2005
(603 letters)
>mm_chr2_135492864_135493866
Length = 1003
Score = 1096 bits (567), Expect = 0.0
Identities = 594/603 (98%)
Strand = Plus / Plus
Query: 1 tatctctccctgtcttgacagttgcagtgtttatcctgaacactgagaagttagatctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctctccctgtcttgacagttgcagtgtttatcctgaacactgagaagttagatctgt 260
Query: 61 ttctgcaggcgagtatttcaaggcgaacccaccctaattttttcttcccagtcttcaatg 120
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttctgcaggcaagtatttcaaggcgaacccaccctaattttttcctcccagtcttcaatg 320
Query: 121 ggagataactttgggtcaaatggaaatgtagccccttgagatggggttctcctgtatcta 180
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggagatcactttgggtcaaatggaaatgtagccctttgagatggggttctcctgtatcta 380
Query: 181 ctgatgtttggttattgattacatagccaaagccctctctggaatttaagtttttatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ctgatgtttggttattgattacatagccaaagccctctctggaatttaaatttttatttt 440
Query: 241 cgctggcttctaaaatgatgtaagtgagctactaatatgttccagttgaagtgacaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgctggcttctaaaatgatgtaagtgagctactaatatgttccagttgaagtgacaatgc 500
Query: 301 agaaagacagaagcaatatgtaaagaactctttcccacctacaccctccccagatataac 360
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatacagaagcaatatgtaaagtactctttcccacctacaccctccccagatataac 560
Query: 361 cattggcaacagctgcaagtgtctccctcctccttttgtccattcatttacatacacaaa 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattggcaacagttgcaagtgtctccctcctccttttgtccattcatttacatacacaaa 620
Query: 421 tacatatacgtggttctcttgttatataaattgaatcatactgtacatgcagatgtattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tacatatacgtggttctcttgttatataaattgaatcatactgtacatgcagatgcattt 680
Query: 481 ttattatataaactgcatcacactacattcacttttcttagacttgctttgtcttcataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattatataaactgcatcacactacattcacttttcttagacttgctttgtcttcataa 740
Query: 541 ctgtatcttatgataatttatttattgtctggatactggttatcttagctttgtaacact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtatcttatgataatttatttattgtctggatactggttatcttagctttgtaacact 800
Query: 601 gta 603
|||
Sbjct: 801 gta 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_k11.g1 MSMg01no532_k11.g1 CHROMAT_FILE:
MSMg01no532_k11.g1 PHD_FILE: MSMg01no532_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:38 2005
(641 letters)
>mm_chr2_135674149_135675189
Length = 1041
Score = 1116 bits (577), Expect = 0.0
Identities = 616/641 (96%), Gaps = 21/641 (3%)
Strand = Plus / Minus
Query: 1 tttttcaagcatcatatgtaaagttctgtcttctcacagttggctggatgaataatgcta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 tttttcaagcatcatatgtaaagttctgtcttctcacagttggctggatg---aatgcta 753
Query: 61 cctgagatgaaaggagggagaagcaaagaggatcaaatacataatagagatttctaaaat 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctgagatgaaaggagggaggagcaaagaggatcaaatacataatagagatttctaaaat 693
Query: 121 cttaaagacacaaaccgtgctgtctcaaagcctgcactgtataaaaaaagcaagccagtc 180
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 692 cttaaagacac----------------aagcctgcactgtataaaaaaagcaagccagtc 649
Query: 181 agacaatggtggctatttatatgatatccctctactgctctgaactgtagagagaaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agacaatggtggctatttatatgatatccctctactgctctgaactgtagagagaaccca 589
Query: 241 tgaagcagggaagccctcatggagaggggtagccactgtcactcaggtggcccagctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgaagcagggaagccctcatggagaggggtagccactgtcactcaggtggcccagctggg 529
Query: 301 gaccaaagggcacaggaaaagcccaaggcacagagcttaggaccacagagggcttcagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaccaaagggcacaggaaaagcccaaggcacagagcttaggaccacagagggcttcagtt 469
Query: 361 taatactttccttgtttgcagagagagctgctcaccctaaatatgtaaaaacaaacacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 468 taatactttccttgtttgcagagagagctgctcaccctaaatatgtaaaaacacacacca 409
Query: 421 gtgaacggggctttcctactcacagccatacacggtcgggctcaggtcttcttaaagtta 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 408 gtgaacggggctttcctactcacagccatacatggtcgggctcaggtcttcttaaagtta 349
Query: 481 cttttttttttaaagacagtcttgctatgtagctgaggctgtcctccaacttgcaatccc 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctttttttttt--agacagtcttgctatgtagctgaggctgtcctccaacttgcaatccc 291
Query: 541 cctgcctctaactcctcagtaccaggattacagatgtgcaccaccatgtatgtctagtat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctgcctctaactcctcagtaccaggattacagatgtgcaccaccatgtatgtctagtat 231
Query: 601 atgtaatttgtaacgcgtagttacaggtataagttgataac 641
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 230 atgtaatttgtaacacgtagttacaggtataagttgataac 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
