Query= MSMg01no533_d09.b1 MSMg01no533_d09.b1 CHROMAT_FILE:
MSMg01no533_d09.b1 PHD_FILE: MSMg01no533_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:21 2005
(661 letters)
>mm_chr2_47214713_47215773
Length = 1061
Score = 1193 bits (617), Expect = 0.0
Identities = 647/657 (98%)
Strand = Plus / Plus
Query: 5 gaattctttgtttatctctgtaccccatttttaatagggttatttggttatctggattct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgtaccccatttttaatagggttatttggttatctggattct 264
Query: 65 aacttcttgagttctttgtatagtttggatattagccctctatcagatgtaggattgata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttcttgagttctttgtatagtttggatattagccctctatcagatgtaggattgata 324
Query: 125 aagatcttctcccaatctgttggttgccattttgtcctactgaaagtgtccttttcctta 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatcttctcccaaactgttggttgccattttgtcctactgaaagtgtccttttcctta 384
Query: 185 gagaagctttgcaactttatgaggtctcatttgtcactttttgatcttagagcaaaagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaagctttgcaactttatgaggtctcatttgtcactttttgatcttagagcaaaagca 444
Query: 245 ctctttccatgatcttatattctttgaaccacaactacgcgtggaaacaaggggggtaaa 304
|||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 445 ctctttccatgatcttatattctttgaaccacaagtatgcgtggaaacaaagggggtaaa 504
Query: 305 gttcacagccatgcccaggattcagactcctgagcatagcatcagagtgcagatctaaat 364
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct: 505 gttcacagccatgcccgggattcagactcctgaacacagcatcagagtgcagatctaaat 564
Query: 365 ttattgttacatgaggttatatatagctttttagtcagttagggtgtatttaatgtattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttattgttacatgaggttatatatagctttttagtcagttagggtgtatttaatgtattc 624
Query: 425 aagagcaaatcagagtgcaataagtggaatttagcagaatctagtctgtccatgggcctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagagcaaatcagagtgcaataagtggaatttagcagaatctagtctgtccatgggcctg 684
Query: 485 taggggagggagatttctgtgaagacaaatgccctggtggtgttgctttctttgtgatgt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 taggggagggagatttctgtgaagacaaatgccctggtggtgttgctttctttgtgttgt 744
Query: 545 ctcacaggcaaacccagggcaatgtcagatcatacactgtacactgtggatcaagactct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcacaggcaaacccagggcaatgtcagatcatacactgtacactgtggatcaagactct 804
Query: 605 tcatgcagttgcaagagccggtagctcctcaatctccatcccacttcttcctccacc 661
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 805 tcatgcagttgcaagagccggtagcacctcaatctccatcccacttcttcctccacc 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_d09.g1 MSMg01no533_d09.g1 CHROMAT_FILE:
MSMg01no533_d09.g1 PHD_FILE: MSMg01no533_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:22 2005
(657 letters)
>mm_chr2_47328846_47329901
Length = 1056
Score = 994 bits (514), Expect = 0.0
Identities = 595/656 (90%), Gaps = 53/656 (8%)
Strand = Plus / Minus
Query: 1 ctacatacataaataaaaacttctgagtgcataaaatattacttgtatatcagcttattt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 988 ctacatacataaataaaaacttctgagtgcataaaatattacatgtatatcagcttattt 929
Query: 61 tttaacatttattttacctttatcagtgttttgcctgcatatatgaagtggaatacttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tttaacatttattttacctttatcagtgttttgcctgcatatatgaagtggaatacttta 869
Query: 121 atatcacgtatctacagaagtcagaagtgggtgttcgatttttttggtgttagtgttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 atatcacgtatctacagaagtcagaagtgggtgttcgatttttttggtgttagtgttaca 809
Query: 181 tatgattgtgagctaccatgggagagttggaaacttaactttgcttcattgtaagagaga 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 808 tatgattgtgagctaccatgggagagttgaaaacttaactttgcttcattgtaagagaga 749
Query: 241 caagttttttgtaactgcttagctaactcttcagccccctcagtgtagacttttgatata 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 748 caagttttttgtaactgcttagctaactcttcagcccactcagtgtagacttttgatata 689
Query: 301 aaaggttttcaaaaggtttcagaattttcagttattattatcaatattgttaatgcttat 360
|||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 688 aaaggttt-caaaaggtttcagaatttgcagttattattatcaatattgtcaatgcttat 630
Query: 361 tatttaatgcactatgcagttacactaaaaggttactctgcatatatctaatattaccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tatttaatgcactatgcagttacactaaaaggttactctgcatatatctaatattaccat 570
Query: 421 gtttataatatctgtctgctcaaaattttatcactgagtagtatattatgtgagtgaatt 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 gtttataatatctgtctgctcaaaattttatcactgagtagcatattatgtgagtgaatt 510
Query: 481 tgaatatggatctttaaagacctctctatttaagtgagatcttcatggtggtattaatat 540
|||||||||| ||||||||||||||||||||
Sbjct: 509 tgaatatggacctttaaagacctctctattt----------------------------- 479
Query: 541 aaaacagcgagggttctttttttttttttaagtgtgtaatagttaaggttactattgttg 600
|||||||||||||||||||||||||||||||||||||
Sbjct: 478 -----------------------ttttttaagtgtgtaatagttaaggttactattgttg 442
Query: 601 tgctaaaacatcatcaccaaatataaacaggagaggaacgggttccttttccctac 656
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgctaaaacatcatcaccaaatataaacaggagaggaatgggttccttttccctac 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
