BAC Information

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BAC

Clone NameMSMg01-533O04
Chromosome2 (Build37)
Map Location 5,168,447 - 5,168,767
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd4a, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3
Downstream geneLOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O04.T7 (MSMg01no533_o04.b1)MSMg01-533O04.TJ (MSMg01no533_o04.g1)
ACCAG601702AG601703
length718737
length of high quality
(start - end)
422 (49 - 470)597 (79 - 675)
definitionCHROMAT_FILE: MSMg01no533_o04.b1 PHD_FILE: MSMg01no533_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:12 2005CHROMAT_FILE: MSMg01no533_o04.g1 PHD_FILE: MSMg01no533_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTGTTTCCCTATTTGTGGCCGCTAAACGTTTTTTATTTTCAGAGGA
TCCGCGGAATTCTTTGTTTTTCTCTGAGCCCCATTTTTAATGGGGTTATT
TGATTTTCTGGAGATAACACCTTCTTGAGCTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGACCTTTTTTGTCTTATTGATGGCGTCTTTTGCCTTACAGAAGCTTTG
CAATTTTATGAGGTCCCATTTATCGATTCTCGATCTTACAGTACAAGCCA
TTGCTGTTCCGCTTAGGAATTTTTCACCTGTGCCCATATCTTCGAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGCTTTATGTGGAG
TTCCTTGATCCACTTATATTTGACCTTAGTACAAGGAGATAGGAATGGAT
CAATTCGCATTCTTCTACATGATATCTGCCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAA
ATATCTTGCGACTTTATGTGTGTGGCTTCTTTTCTGGTTTCTCAACTCTA
TTCCATTGGTCTATTTTTTTGTCGCTATACCATAATCATGCAGTTTTTCT
CACAATTGTTCTGTATTATATTTTTAAGTCTCGCCTTCCCTGTTCCTTTA
TGTCGCCATGCCCTCCTN
NNNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTCTACCATGTGGGTGA
CAAGGACTGATCTCAGGCCATCAGCTTTGTTCCTGGTCTGCATTCCCACA
TGATGCCAAGGGGTGTTATAATAGGTTTTAAATGTCTAGATGATCTTAAA
GTGTTTTAGGATAGAGTCCTACTGGGGAACCCAGAACCCAGGCTTGCCTC
AAACTCACGATCTTCCTGCCTCATCCTCTGAGGACTGGTATCATAGGCAT
GTCCTGCTAAAACCAGCTATTAGGCTAAGTGATTGTAATTAGGAGTCTCC
ATTTTGCCTTCCAATGCACCTTTACTCCTTTTTATATTTACTGTGCATTT
TATATTTTATTTTATTATGTGCGTGGGGCCGTGGGTGTCATGAAAGCCCC
CATCTGAAGGTCAGAGGACAAACTGTGGGAGTCAGTTCCACCATGTTGGT
CCAGGGATCAAATTCAAGTCCCCAGGCTTGGTGGAAGTCACCTTTACCAG
CTAACTCTAAGCCCCCTGCTTTTATATTTGAAACAGCCAACAGCGTTCTT
ATTCTTCATTGAAGACCTTTCCTGGAAAATCAACTCTTCCCTATTCCCAT
ATTCAGCTCAGCAGTTGTACTCAGCCCTGAGGGCTTCACGTTATGTCTGT
GAGACCGTGTACCAAAGTACAGAGGCCCTGTGGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o04.g1 MSMg01no533_o04.g1 CHROMAT_FILE:
MSMg01no533_o04.g1 PHD_FILE: MSMg01no533_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:12 2005
         (597 letters)



>mm_chr2_5167771_5168767
          Length = 997

 Score =  567 bits (293), Expect = e-165
 Identities = 314/321 (97%)
 Strand = Plus / Minus

                                                                       
Query: 277 tgccttccaatgcacctttactcctttttatatttactgtgcattttatattttatttta 336
           ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 997 tgccttccaatgcacttttactcctttttatatttactgtacattctatattttatttta 938

                                                                       
Query: 337 ttatgtgcgtggggccgtgggtgtcatgaaagcccccatctgaaggtcagaggacaaact 396
           ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 937 ttatgtgcgtggggcggtgggtgtcatgcaggcccccatctgaaggtcagaggacaaact 878

                                                                       
Query: 397 gtgggagtcagttccaccatgttggtccagggatcaaattcaagtccccaggcttggtgg 456
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gtgggagtcagttccaccacgttggtccagggatcaaattcaagtccccaggcttggtgg 818

                                                                       
Query: 457 aagtcacctttaccagctaactctaagccccctgcttttatatttgaaacagccaacagc 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aagtcacctttaccagctaactctaagccccctgcttttatatttgaaacagccaacagc 758

                                                                       
Query: 517 gttcttattcttcattgaagacctttcctggaaaatcaactcttccctattcccatattc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gttcttattcttcattgaagacctttcctggaaaatcaactcttccctattcccatattc 698

                                
Query: 577 agctcagcagttgtactcagc 597
           |||||||||||||||||||||
Sbjct: 697 agctcagcagttgtactcagc 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)